PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 203aa MW: 22905.4 Da PI: 4.3553

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_314205g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.4	1.7e-13	26	75	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r ++ +g+Wv+eIr p++ r +++lg++ tae+Aa+a + a+ +l+g MA_314205g0010 26 QFKGIRLRE-WGKWVSEIRMPKS---REKIYLGSYNTAEQAARAFDFAMYYLRG 75 69***99.******954...4*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-26	25	85	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-26	26	89	IPR001471	AP2/ERF domain
CDD	cd00018	5.62E-25	26	85	No hit	No description
SuperFamily	SSF54171	3.07E-18	26	85	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.809	26	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-7	27	38	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-6	27	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-7	49	65	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MEKPSPQEYD HANDLPNEDR RQPCRQFKGI RLREWGKWVS EIRMPKSREK IYLGSYNTAE 60 QAARAFDFAM YYLRGSNAKL NFPDSVPAIP SSSSLSPQQI RAAAAKHALN ELPSTSPSLH 120 QEPSQSSSVS EMELSSDDKQ KSEELAFWQS LFAGSDGDGY LNLEKIPSID EAMALEIIPT 180 SQEEEVDISV DEIGLWNFED VFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-13	26	83	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q84QC2	8e-33	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	B8LMR5	2e-65	B8LMR5_PICSI; Uncharacterized protein
STRING	EOY30203	8e-34	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	3e-26	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]