PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HSF

Protein Properties

Length: 442aa MW: 50340.7 Da PI: 6.9569

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_29913g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.1	4.3e-36	47	138	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y+++ed+ +++++sws+++nsfvv++++ f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ i MA_29913g0010 47 FLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKLI 133 9**************************************************************999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 +r+k MA_29913g0010 134 QRRKP 138 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-38	43	136	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.8E-60	43	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.13E-34	43	136	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.2E-31	47	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-20	47	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-20	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	86	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-20	98	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDSQNSGISA GDEVNLGNFN VKEEESMQMP SCPRPMEGLH CAGPPPFLTK TYDMVEDPLT 60 DTVVSWSSTN NSFVVWNSHL FSSDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE 120 GFLRGQKHLL KLIQRRKPSC PPQFLDNLHH HHQQDQQQGM GACVEVGQFG MVGEIEGLRR 180 DKSVLMMEVV KLRQQQQSTR NQLQTIGHRL QSTEQRQQHM MTFLARAIQN PTFLAQLSQN 240 KQASKRLATS KKRRRLPKGE AQVNDVFWEE LLNEHFDSQD DSGTEAEANF PDQDKGNFSS 300 SSRSDVNLLA EQMGLTAFHQ SIPIIPEKLI ALESANVIDF LFGTGWTSDG IHQASQVVGE 360 SASNDIKIPN MIVYIFSHQH QAGHMMVAYR FDSKANQNMC RISRWIQEMT QGCTFIDSTG 420 AVNTMASLQK RYIIRDDIFK SM

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDSQNSGISA GDEVNLGNFN VKEEESMQMP SCPRPMEGLH CAGPPPFLTK TYDMVEDPLT  60
DTVVSWSSTN NSFVVWNSHL FSSDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQKHLL KLIQRRKPSC PPQFLDNLHH HHQQDQQQGM GACVEVGQFG MVGEIEGLRR  180
DKSVLMMEVV KLRQQQQSTR NQLQTIGHRL QSTEQRQQHM MTFLARAIQN PTFLAQLSQN  240
KQASKRLATS KKRRRLPKGE AQVNDVFWEE LLNEHFDSQD DSGTEAEANF PDQDKGNFSS  300
SSRSDVNLLA EQMGLTAFHQ SIPIIPEKLI ALESANVIDF LFGTGWTSDG IHQASQVVGE  360
SASNDIKIPN MIVYIFSHQH QAGHMMVAYR FDSKANQNMC RISRWIQEMT QGCTFIDSTG  420
AVNTMASLQK RYIIRDDIFK SM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-25	38	136	17	129	Heat shock factor protein 1
5d5v_B	1e-25	38	136	17	129	Heat shock factor protein 1
5d5v_D	1e-25	38	136	17	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	255	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269\|PubMed:18064488}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085129	0.0	EF085129.1 Picea sitchensis clone WS02725_C11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512857.1	1e-103	heat stress transcription factor A-6b
Swissprot	Q6F388	1e-97	HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBL	A9NUX6	0.0	A9NUX6_PICSI; Uncharacterized protein
STRING	Aquca_017_00542.1	1e-100	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	4e-86	heat shock transcription factor A6B

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]