PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_283702g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 408aa MW: 45170.3 Da PI: 5.7088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 226 | 272 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR+ + ++f L l+P + kK++Ka++L A++Y+k+L MA_283702g0010 226 QDHIMAERKRREILSQRFIALSALIPGL-----KKMDKASVLDDAIKYVKKL 272 5699************************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-8 | 227 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 227 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-15 | 227 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.76E-12 | 228 | 276 | No hit | No description |
SMART | SM00353 | 8.5E-12 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MEMLSAQWLS ALGMEDPALL RQYSNLSNPT LEQLAASMDY QHNENFDQGG SFQSFNPMEN 60 LKIPSTACSE FHSGVRFSEG LTGYERPMKI PKANSWDSTS SQLPFSSVYL QNSMQNVQVQ 120 QQHCLSQQLE SYITSIPQVK DDIYETVAPR TPAIQGEIMV SKGSAGQKSC ISNSDINRGL 180 DAFNLSAGEE LISTQNIFMG NHFLDANVST SIMNPPVPAK TSGHSQDHIM AERKRREILS 240 QRFIALSALI PGLKKMDKAS VLDDAIKYVK KLRERLNLLE QQTPKDTVQS VVYVNKSPLS 300 SEDDKTSSIE NSSKASVDDK FGLLTPEIEA RVVGRNVLVR IHCEKKKGLL VKCLSELEKL 360 QLTVANASIL SFSETALDLT LSAQMEEGCG LTVTDIVKNL EAFFKKMS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 236 | ERKRRE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-48 | bHLH family protein |