PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 164aa MW: 17217.7 Da PI: 10.9783

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_267974g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2.1e-08	3	40	10	47
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++G+g+Wk+I+r + Rt+ q+ s+ qky MA_267974g0010 3 RLFLLGLDKHGKGDWKSISRNFVISRTPTQVASHAQKY 40 67888999*************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.173	1	45	IPR017930	Myb domain
Pfam	PF00249	9.2E-7	2	40	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.6E-11	2	43	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.8E-6	2	39	IPR009057	Homeodomain-like
CDD	cd00167	3.38E-6	2	41	No hit	No description
SuperFamily	SSF46689	1.37E-10	2	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MERLFLLGLD KHGKGDWKSI SRNFVISRTP TQVASHAQKY FIRMNSANKD RRRSSIHDIT 60 SVNNGDTSIP QGSITGQGNG STGAVGKPAK SLSEPGLPRV VAYGPPVGHP IAVPAGSAVG 120 TPIMIPPGHV PYVSRGSLPG PVVPGTPMNV VPVAYPVSQP TMHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123964	0.0	BT123964.1 Picea sitchensis clone WS04719_C07 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624612.1	4e-63	transcription factor SRM1
Swissprot	Q9FNN6	4e-47	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0D6R5A2	7e-80	A0A0D6R5A2_ARACU; Uncharacterized protein
STRING	EOX99047	5e-60	(Theobroma cacao)
STRING	XP_004513249.1	5e-60	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP275	17	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-49	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]