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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_216909g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 23186 Da PI: 4.3557 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1.1e-15 | 1 | 82 | 16 | 94 |
EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +vlpkk ae++ + ++e+++l +ed ++ W++k++y ++ks++yv++ ++ eFvk ++L+ gDf++F+ d+ +++++ v MA_216909g0010 1 MVLPKKEAEANlpILTEREGMQLCMEDmYLSKNWNFKYRYwpNNKSRMYVME-NTGEFVKTHRLRLGDFIMFYKDE-RNEKYIV 82 79***********788899********8888*********888888889988.********************544.4444555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-16 | 1 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.7E-6 | 1 | 88 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-21 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.461 | 1 | 88 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-12 | 1 | 83 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.91E-20 | 1 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVLPKKEAEA NLPILTEREG MQLCMEDMYL SKNWNFKYRY WPNNKSRMYV MENTGEFVKT 60 HRLRLGDFIM FYKDERNEKY IVRAKKVMSE LMITSGNSVD QAMITSSNSV DQTGTYSSPT 120 LIEERSNQQS TSDKENEVSC ESPYGSGNSV SIDDTKMALV TVEDIFSKEF NIEFPPDIAD 180 SVHLESIPSF GSDEISLEDF IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-31 | 1 | 90 | 20 | 109 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-31 | 1 | 90 | 20 | 109 | B3 domain-containing transcription factor FUS3 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
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Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 1e-32 | B3 family protein |