PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_20925g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Nin-like

Protein Properties

Length: 941aa MW: 103617 Da PI: 6.6906

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_20925g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	476	526	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ MA_20925g0010 476 EKTISLEVLQQYFAGSLKDAAKDIGVCPTTLKRICRQHGISRWPSRKINKV 526 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	465	546	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	478	526	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.21E-23	843	930	No hit	No description
PROSITE profile	PS51745	19.989	845	919	IPR000270	PB1 domain
SMART	SM00666	3.0E-22	845	927	IPR000270	PB1 domain
Pfam	PF00564	5.2E-16	848	924	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.4E-23	848	927	No hit	No description
CDD	cd06407	8.89E-30	849	926	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MEDWEAWMEE TALFSPSLLQ SAVAPPPSPA PSNFSDGDGD LSLRKRMMQA LRYIKDSDST 60 GQNVLAQVWV PVRQGAKHML TTCGQPFVVA SPNGGLFQYR TVSLTYLFSA REEGEDEEEE 120 GGDGHGHSHA LLGLPGRVFR RKLPEWTPNY YSVSEYPRVS HAQHYNVRGT VALPVFEPWG 180 QSCVGVVELV MTAQKINYAP EVEKVCRALQ AVNLRSSEIL DHPQVQFLRH INCHWLRLGF 240 HAGIETSSLP GVKGQGLPGK AFASNQPCFS NDISSFSKTE YPLVHYARLF NLAAAVAIRL 300 RSTHTGNDDY ILEFFLPTDC KDSQNLQMLL KSVSVTMHHN EFPEDVQWTN CNNISRISPE 360 LQISPGAEFV QCQERKQIVR QDSFQQALQA GSEGDQNEIQ MGQHPITSLP FVSCQKQQPE 420 LEGSNLSDLK QHRHESAQIN KEISAVLAND DILCSGSLQE HTNIRKGLEK KRGKMEKTIS 480 LEVLQQYFAG SLKDAAKDIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKLQGVIESV 540 KGVGAFKIGN LSTGLVSAAT VPNTSSVHGK SSPAVVQGAA NHDLDMVPPP SNEEVIGIKT 600 SLPGKDCIMP EDFSSSQCQV IATLGTSLSS RLQSIKPGST HIFQETYSVG HAVHVKDVML 660 DENTNGNLHR VENGHVSYVH GATNGISESR NSESPQESIR TPSSQASHPD LSQIHLNSIE 720 DHADPPTITA FSRPPASQCH GGGENLMSQL EFINNGETSL HKRQATSSIL KNTHSETAVN 780 CKRKKLPVES SSDQKPTDFS GQGECLAEAI QSNSRNLSPQ HRCDSRILNL AGLQRDRIIQ 840 EGNKSTIFKV TYKQDTVRFR LPLNAGVSEL HDEVTKRFKL EAGTFDLKYL DDDHEWVLLA 900 CDADLQECIG ILNLSGGKAI KLVVYDMSSN VGSSCESSGE L

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MEDWEAWMEE TALFSPSLLQ SAVAPPPSPA PSNFSDGDGD LSLRKRMMQA LRYIKDSDST  60
GQNVLAQVWV PVRQGAKHML TTCGQPFVVA SPNGGLFQYR TVSLTYLFSA REEGEDEEEE  120
GGDGHGHSHA LLGLPGRVFR RKLPEWTPNY YSVSEYPRVS HAQHYNVRGT VALPVFEPWG  180
QSCVGVVELV MTAQKINYAP EVEKVCRALQ AVNLRSSEIL DHPQVQFLRH INCHWLRLGF  240
HAGIETSSLP GVKGQGLPGK AFASNQPCFS NDISSFSKTE YPLVHYARLF NLAAAVAIRL  300
RSTHTGNDDY ILEFFLPTDC KDSQNLQMLL KSVSVTMHHN EFPEDVQWTN CNNISRISPE  360
LQISPGAEFV QCQERKQIVR QDSFQQALQA GSEGDQNEIQ MGQHPITSLP FVSCQKQQPE  420
LEGSNLSDLK QHRHESAQIN KEISAVLAND DILCSGSLQE HTNIRKGLEK KRGKMEKTIS  480
LEVLQQYFAG SLKDAAKDIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKLQGVIESV  540
KGVGAFKIGN LSTGLVSAAT VPNTSSVHGK SSPAVVQGAA NHDLDMVPPP SNEEVIGIKT  600
SLPGKDCIMP EDFSSSQCQV IATLGTSLSS RLQSIKPGST HIFQETYSVG HAVHVKDVML  660
DENTNGNLHR VENGHVSYVH GATNGISESR NSESPQESIR TPSSQASHPD LSQIHLNSIE  720
DHADPPTITA FSRPPASQCH GGGENLMSQL EFINNGETSL HKRQATSSIL KNTHSETAVN  780
CKRKKLPVES SSDQKPTDFS GQGECLAEAI QSNSRNLSPQ HRCDSRILNL AGLQRDRIIQ  840
EGNKSTIFKV TYKQDTVRFR LPLNAGVSEL HDEVTKRFKL EAGTFDLKYL DDDHEWVLLA  900
CDADLQECIG ILNLSGGKAI KLVVYDMSSN VGSSCESSGE L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT122259	0.0	BT122259.1 Picea sitchensis clone WS0442_G03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022736359.1	1e-138	protein NLP6-like isoform X3
TrEMBL	D5A7X9	0.0	D5A7X9_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	8e-98	Nin-like family protein