PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_208967g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 450aa    MW: 49129 Da    PI: 10.2074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_208967g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17136178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +++a++q+G++ W+tIar ++ gRt++ +k++w++ 
   MA_208967g0010 136 PFTPSEDAAILQAHAQHGNK-WATIARSLP-GRTDNAIKNHWNST 178
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-16127185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21128182IPR009057Homeodomain-like
PROSITE profilePS5129423.86129183IPR017930Myb domain
SMARTSM007172.1E-15133181IPR001005SANT/Myb domain
CDDcd001671.50E-12136179No hitNo description
PfamPF002499.4E-15136178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MIQWQLTIRE FQQGTSFVGS MLAIGIGRRA LDRLAGATGS FLAYPGRHCR DRKSVNSNIY  60
SMAHLRKKIP KRRGRVVLRS TSMRQFYGIQ AGKVNISCWG QPTTNTCAAH QLFAGRRLLK  120
SMLQAPLLSP QVEHRPFTPS EDAAILQAHA QHGNKWATIA RSLPGRTDNA IKNHWNSTLR  180
RRCRDSDKGI LVHLDDEISS LDAARKRSSD GFSHDGSSAL EDNCCSSWEV DSKRLKRLGE  240
LGAEQGPDVE VELEVSDRSD SNPGRVLYRP VPVASFFGSF GKTVANLQET ASGSVGVDPP  300
TSLSLSPPGL DPAIPSPKPP LQKDFHNNST DNNKIPTPPV VGYMRADEAV ERLSTAVKAT  360
VASMLTPVLS SSPRGFNPSA VSSDLLALMR DMVAKEVHKY MSMVAKEVHK YMSSHQPPGM  420
YTPLSPHPEF LGAAGLVRNV VLGGALHLNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-1712818250104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-1712818250104C-Myb DNA-Binding Domain
1msf_C6e-1712818250104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027560.0BT102756.1 Picea glauca clone GQ02014_D18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYF10.0A5JYF1_PICGL; R2R3-MYB transcription factor MYB7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-24myb domain protein 77