PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20603g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 332aa    MW: 37975.3 Da    PI: 9.1137
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20603g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1758144181
       trihelix   1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                    rWt +e+l+Li+a++  ++  + g      k++  +W+  s+++++ g++r+++qC+++w+ ++ +ykki++ e++  se++s +++
  MA_20603g0010  58 RWTVSETLTLINAKQVEKNLPSPGgfmkqtKSAIEKWKCTSAQCHSNGLNRTATQCRDRWDHIQPDYKKIRHYERSIVSEHESYWSM 144
                    8**************99998886433333379999******************************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-649126IPR009057Homeodomain-like
PROSITE profilePS500906.43551121IPR017877Myb-like domain
PfamPF138371.4E-1256144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLSDSFPDVI CTQVGSQGAY ALTIPHNEVT VGEVHDALPL SEVERTITQK KQPKGRVRWT  60
VSETLTLINA KQVEKNLPSP GGFMKQTKSA IEKWKCTSAQ CHSNGLNRTA TQCRDRWDHI  120
QPDYKKIRHY ERSIVSEHES YWSMTTKERI DKKLPANFTK EIFDAMEKHF GQNRTIHPGD  180
MVIDTSASNY GAFEQNAASE STPLHKNMKL EMPLENQGDT SIDRDSHFTG KKRKVASMTS  240
GIKSTLVENN KKIISNLKLA EQGHLKRHEK YCSMFEQRME IDEKYLKDHI VSVQRMIYIE  300
EQKVKAQQEL ITALNNIGQA MFKICETMGK KV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6774540.0EF677454.1 Picea sitchensis clone WS02769_C04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNP60.0B8LNP6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-23Trihelix family protein