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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_203191g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21312.8 Da PI: 10.0981 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.4 | 1.3e-21 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f+taeeAa+a+++a+++l+g+ MA_203191g0010 32 THFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDNAARRLRGH 83 589*******.**********883....5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-28 | 32 | 92 | No hit | No description |
Pfam | PF00847 | 2.3E-14 | 32 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.906 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MHMARMGLGE TMHMARMGLG GCEDESRAVK ETHFRGVRKR PWGRFAAEIR DPWKKTRVWL 60 GTFDTAEEAA RAYDNAARRL RGHKAKTNFS NDHNASAALS WTQTLHPHHH QQQPDLNATA 120 FASISAFVSN KRREVSVGSD RLEFESANNS LRAVSLSEQK ASSSPPKAPL LLDLNLPPTA 180 DQENESAAPW N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 30 | 89 | 2 | 62 | ATERF1 |
3gcc_A | 3e-21 | 30 | 89 | 2 | 62 | ATERF1 |
5wx9_A | 4e-21 | 26 | 99 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102160 | 1e-68 | BT102160.1 Picea glauca clone GQ0167_K20 mRNA sequence. | |||
GenBank | BT122824 | 1e-68 | BT122824.1 Picea sitchensis clone WS0461_L01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278126.1 | 7e-40 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | D5A9F4 | 2e-50 | D5A9F4_PICSI; Uncharacterized protein | ||||
TrEMBL | E0ZDA6 | 1e-50 | E0ZDA6_PICSI; Ethylene-responsive element binding factor-like protein (Fragment) | ||||
STRING | XP_010278126.1 | 3e-39 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-22 | erf domain protein 9 |