PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_19453g0040
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 327aa    MW: 37307.3 Da    PI: 4.497
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_19453g0040genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1981134356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV vWFqNrRa++k
  MA_19453g0040  81 KKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWK 134
                    56789************************************************9 PP
2HD-ZIP_I/II131.72.9e-4280171192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+++qv++LE+sFe e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y++l+ + ++L ke+++Lr+e++
  MA_19453g0040  80 EKKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVT 171
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2069138IPR009057Homeodomain-like
PROSITE profilePS5007117.29776136IPR001356Homeobox domain
SMARTSM003892.5E-1979140IPR001356Homeobox domain
CDDcd000861.33E-1881137No hitNo description
PfamPF000465.4E-1781134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-2082143IPR009057Homeodomain-like
PRINTSPR000311.6E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5116132IPR000047Helix-turn-helix motif
PfamPF021838.3E-17136177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMSGGRMYGG PNVLVMGNEN ISRSADALEA LLSSPVFNGS RSVANLEEVI GNVSKRPFYN  60
SFDQEETGDE DLDDCIHPPE KKRRLTADQV QFLERSFEIE NKLEPERKIQ LAKDLGLQPR  120
QVAVWFQNRR ARWKTKQLER DYDILKSRYE NLRVDYDSLL KEKDKLRAEV TFLTGKLHSK  180
DCDLEAQTKD SEYVDKKVFP QPASQCVEKF ERGTSIKDTP PSCKHEDLLS SGTDSSGVLD  240
EDSPHHVDCG HSSLDHVNSH LFEADQSDLS HADEEEEEEG MSEKLLPQTY TYHLLKVEDG  300
PYPDASIASY NEMFAMEDQV PLGPWWD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1234850.0BT123485.1 Picea sitchensis clone WS04713_N08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242341.12e-91PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLD5AB830.0D5AB83_PICSI; Uncharacterized protein
STRINGXP_010242341.18e-91(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-56homeobox 1