PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18836g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 289aa    MW: 31724.4 Da    PI: 9.7681
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18836g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.6e-2590134145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  MA_18836g0010  90 DPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVET 134
                    79****************************************996 PP
2QLQ651.9e-222055237
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                   +FT++Q+q+L++Q+l++Ky++a+ PvPp+Ll +i+k
  MA_18836g0010 20 PFTPSQWQELEHQALIFKYMMAGIPVPPDLLIPIRK 55
                   9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.4E-131955IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.7062055IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.3E-172054IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.62490134IPR014977WRC domain
PfamPF088791.6E-2191133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGGETMNYHT GIQMHGARPP FTPSQWQELE HQALIFKYMM AGIPVPPDLL IPIRKSLEAI  60
NAGLFNHPHH IHPNIPWSTS FQLGFAKNCD PEPGRCRRTD GKKWRCSKDA FPDSKYCERH  120
MHRGRNRSRK PVETPASHSS SLSLSTASAR NNSIPSITNN TQSHVSFATP YSTSRLAGAG  180
IGAPPSTANS NSTSTNQFNT DAGSYSIPSK DYRYMKGDID EHVFFSSEVS GTSRGLGIDS  240
PSMLSSSVDS GWRSLMPSKM SPFSSQSSFP TDATTKHQHS FLTSRFGGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1090920.0BT109092.1 Picea glauca clone GQ03204_I12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854210.11e-73growth-regulating factor 4
TrEMBLA0A0M3LA871e-171A0A0M3LA87_9SPER; Growth regulating factor 1
STRINGERN156774e-73(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-47growth-regulating factor 5