PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_18616g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 399aa    MW: 44382.8 Da    PI: 5.0963
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_18616g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17275309135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  MA_18616g0010 275 CMHCDTMKTPQWRTGPMGPKTLCNACGVRYKSGRL 309
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.714269305IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-16269319IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15273332No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14273307IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.90E-12274321No hitNo description
PfamPF003204.4E-15275309IPR000679Zinc finger, GATA-type
PROSITE patternPS003440275300IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEATDYLYGT NYGTPFLDGK KSSGKFTELK NGVQLQDFFH IDDLLDFSNE EIAGPIGDDS  60
NNWPSCTTTA AAADSSTITL TETVSCNSSL DGKSFRAYNV LETDENNNGH LCVPCDDLAE  120
LEWLSNFVED SFSTEQAPKP IFPPNFGDVR TVKEEEKPHI ANPIRSSSPM SGLDTSSCSW  180
KTSTCSWKTP SFSPETPVPG RARSKRSRAP ACNWSSRIVS PASSASALEN GPTSSVLSSD  240
SEFFAESYFP AKKPAKISHG NKKREHEQQT QIRKCMHCDT MKTPQWRTGP MGPKTLCNAC  300
GVRYKSGRLV PEYRPAASPT FVVSKHSNSH RKVIEMRRQK EMQVALQQAS KLYPNDKEGD  360
EDGDEYEEDE DGSDGQYPHF GSDDDNYLVH TNQDYRHFI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1070120.0BT107012.1 Picea glauca clone GQ03101_M09 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-58GATA transcription factor 12