PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_178860g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 631aa MW: 71284.5 Da PI: 8.3408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.7e-13 | 472 | 518 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++Lq MA_178860g0010 472 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLGDAIAYIQELQ 518 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.3E-56 | 51 | 232 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.971 | 468 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-18 | 471 | 533 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-14 | 471 | 522 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-18 | 472 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-11 | 472 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-17 | 474 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 5.68E-4 | 568 | 625 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MGTETATALK FWNEEDKDMV KAVLGPNAFE HLIMSFLSCE GLVAGVSDSA LQQKLQYLVE 60 FSSSINWTYS IFWQLSRSKV GDYVLGWGDG YFKEPKHGEE MARRFNESET EQRMKKKVLQ 120 KLHIFFGGAK DDDFAMGLDN VSDTEMFYLT SMYYSFPRGV GVPGKALGSG QYIWLKDAHR 180 TSNSISRRSF VARSGGIQTI LCVPTDTGVV ELGSVDSIKE NKEVVQMVKS IFNDHQVQQL 240 GHSRGSALSR SPARVPEIHP LSREKDVQES AVVPFKLYEY GAHQKVVAQD YRKVFGQDLN 300 SGRTRTLVDD KFISSKMENR LLQPVLRAPN GHQHEYYLNG DKIFYGSNKK GFQSITLNQV 360 CSSEEGDIND SRHDYHQQKH GNGVLILNND NNNLKWSKEE NKIKERQRQQ QQSQMEFSGT 420 SRSIVSLRHC VAESEHSDAD APCKDDKSPL VDERRPRKRG RKPANGREEP LNHVEAERQR 480 REKLNQRFYA LRAVVPKISK MDKASLLGDA IAYIQELQKK LKDMEKEKET QEKTSHAPAV 540 APQGNIPAVV NNNSIFDVDV QIVNGDAVIR VTCPRESHPV ARVMLALQEM QLDVQQADVS 600 TAKEMIFHTF IVKLNGAQEL TKEKLVAAIS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-31 | 47 | 233 | 5 | 193 | Transcription factor MYC3 |
4rqw_B | 3e-31 | 47 | 233 | 5 | 193 | Transcription factor MYC3 |
4rs9_A | 3e-31 | 47 | 233 | 5 | 193 | Transcription factor MYC3 |
4yz6_A | 3e-31 | 47 | 233 | 5 | 193 | Transcription factor MYC3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 453 | 461 | RRPRKRGRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107637 | 0.0 | BT107637.1 Picea glauca clone GQ03110_N06 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2531 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 9e-69 | bHLH family protein |