PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_178280g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 471aa MW: 52888.9 Da PI: 5.2782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 383 | 425 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N+++ Lr+++P+ + K++ ++L ++eY k+L MA_178280g0020 383 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 425 58*********************66......**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.602 | 376 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 378 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-9 | 382 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-13 | 383 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-7 | 383 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDTSIYAPTC LNQAIAESPW DNNTNGHIDI PKYRVLQEVN GIALKDSNLE TANSVLNVIG 60 VTRNPNTELV LEDIKSQYGA DTFEGCTHSQ RDPCAWNPIS PWDFHENSIR HGYCQSSKCF 120 KTESREDGGD FGLSSGVELE QNAFGDGTVF KSENSNALHK DPSLDLEKNS WERFSGQALQ 180 SELGLICTNV SDISHVGSES SNFSLRYMHE NFRKSTTGKP YHGMSFNQYD EMEMNRRLFS 240 YTTENVTSTL LDEQRTSIEL FGIEGTKGIA AVFVNEPDGS DGEMLLSTSY KTEIYSDEQS 300 PDTVDLPVKH SEKMVPINTA ERKVANKDGN REENDSITKG LMVKNGDNGA MVTFTTGEIE 360 SSYAKAVGGG MRKGKGQPAK NLLAERRRRK RLNERLCMLR SVVPTISKMD RTSVLSDTIE 420 YTKQLLHQIR FLQRELEPQT DWPALLEPIK DTFGQRPWLG TKNLQTNKFS R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 384 | 391 | ERRRRKRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112334 | 0.0 | BT112334.1 Picea glauca clone GQ03313_I24 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 4e-10 | bHLH family protein |