PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_17689g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 752aa MW: 83508.4 Da PI: 5.2443 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.8 | 2.5e-15 | 522 | 568 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL A+eY+k+Lq MA_17689g0010 522 SHVLAERRRREKLNEKFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLQ 568 8999**********************8.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.2E-52 | 13 | 194 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.739 | 518 | 567 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-19 | 519 | 587 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-16 | 521 | 572 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-20 | 522 | 588 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-13 | 522 | 568 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-19 | 524 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MAVMASANSS AIRKQLESVV QSIQWTYSIF WQLSNQQGVL EWSDGYYNGD IKTRKTVQPM 60 ELSNEELCLQ RTLQLRELYE SLSAGESNQP ARRPCAALSP EDLTDTEWYY LVCMSYTFAP 120 GVGLPGRTLA NGRLVWLCQA NEADSKVFPR ALLAKSASIQ TVVCIPIGDG VLEFGTTELE 180 REDPGLVQRT ISFFMDYPKP ICSEQSTSSP QCSDRDEKDQ VGMMTLLSSD SIVCLGRNQI 240 GASTVTDCGQ YLPTSHEDLD LPIQTFEQKD KISITEDPQQ HGLNESMQVE ICEDYKASGS 300 PEDHCCNGDA GPHEFPLISA ENDCLQNGHV NLNPAALEGW PYMEDNTSHG LQASGECVTQ 360 SIVDPSPQLC TYSQRDMNMN MNVLLGLEQG SNALETMLES AAQTLDEDGH YSRTLSTILE 420 QQQAGNLTES TGFISTKPGK DWRSRHSRQG SGFIHWKSNG NCVVGIKAVA SPQRILKKVL 480 FNLARLHSKY KEDPNYSPKL GEEEIGSKLV GRKIGQEDLS VSHVLAERRR REKLNEKFIV 540 LRSLVPFVTK MDKASILGDA IEYLKQLQRR VEELEASSKV MEAEMRKTQN RNLPKRSCSS 600 TEDMRMARHG GNHVDSCLQS SCLDGELGWT LTDTKQPPSK MPRLESKRKL NDLHKKGSCT 660 LPAREDTEVS VSVIEDDAVL IEIQCPCRHG VLLDIMQRLS SLHLDTCSVQ SSTADKMFAA 720 VLKAKVQEKF GGSKRPSIAE VKEAVELVAS KC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-23 | 8 | 194 | 5 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-23 | 8 | 194 | 5 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-23 | 8 | 194 | 5 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-23 | 8 | 194 | 5 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 526 | 531 | ERRRRE |
2 | 527 | 532 | RRRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131227 | 0.0 | KU131227.1 Picea abies transcription factor bHLH-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V964 | 0.0 | A0A167V964_PICAB; Transcription factor bHLH-2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 5e-75 | bHLH family protein |