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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_175090g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | B3 | ||||||||
Protein Properties | Length: 344aa MW: 38712.9 Da PI: 9.1981 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.2e-13 | 252 | 344 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f +v+++s v++s +l +p +f ++ +++++++ l + + +W+v + + ++++ l+ GWk F+ +n+Lk gD+++F+l+++ + l+v MA_175090g0010 252 FTQVMKKSAVSNSFWLGVPHSFG-RCwF--PRGNVEVLLLH-QRHKWRVLF--VGERSSCGLGPGWKYFAVDNELKIGDTCIFELEDKVNYILKV 340 7899******************9.5644..34667888887.7799*****..66666677***********************98877776777 PP EEE- CS B3 95 kvfr 98 +++r MA_175090g0010 341 HIRR 344 7775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-17 | 244 | 344 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-18 | 248 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-16 | 250 | 344 | No hit | No description |
Pfam | PF02362 | 4.8E-12 | 252 | 344 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.097 | 252 | 344 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-11 | 252 | 344 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MPAVIGAVFT SPLHEVPSDC FKQSRIKGSR DAILEGPSGH LWHPKDIIVF RHANDAHFLV 60 QIFEASGYEK KSTVTVKIYE SHNFHKRGSY CTEATTFGQT VKENPLKDAS GDVKNVQKIS 120 TRNAQRRTTR SRGLKVEISG NCAEACISNS RPLSIKKHEF LGHPKISVKH ELGLPKSKWN 180 FSESQVGSCA KHPIILDSEE EFDSQASSAD SPDQDTYEVS YHSSSEVLQE KVSSLIEEDK 240 TANSVKKGKP KFTQVMKKSA VSNSFWLGVP HSFGRCWFPR GNVEVLLLHQ RHKWRVLFVG 300 ERSSCGLGPG WKYFAVDNEL KIGDTCIFEL EDKVNYILKV HIRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7665 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-12 | B3 family protein |