PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_175090g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 344aa    MW: 38712.9 Da    PI: 9.1981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_175090g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-13252344198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f +v+++s v++s +l +p +f  ++    +++++++ l + +  +W+v +   + ++++ l+ GWk F+ +n+Lk gD+++F+l+++ +  l+v
  MA_175090g0010 252 FTQVMKKSAVSNSFWLGVPHSFG-RCwF--PRGNVEVLLLH-QRHKWRVLF--VGERSSCGLGPGWKYFAVDNELKIGDTCIFELEDKVNYILKV 340
                     7899******************9.5644..34667888887.7799*****..66666677***********************98877776777 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +++r
  MA_175090g0010 341 HIRR 344
                     7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-17244344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18248343IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-16250344No hitNo description
PfamPF023624.8E-12252344IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097252344IPR003340B3 DNA binding domain
SMARTSM010197.1E-11252344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPAVIGAVFT SPLHEVPSDC FKQSRIKGSR DAILEGPSGH LWHPKDIIVF RHANDAHFLV  60
QIFEASGYEK KSTVTVKIYE SHNFHKRGSY CTEATTFGQT VKENPLKDAS GDVKNVQKIS  120
TRNAQRRTTR SRGLKVEISG NCAEACISNS RPLSIKKHEF LGHPKISVKH ELGLPKSKWN  180
FSESQVGSCA KHPIILDSEE EFDSQASSAD SPDQDTYEVS YHSSSEVLQE KVSSLIEEDK  240
TANSVKKGKP KFTQVMKKSA VSNSFWLGVP HSFGRCWFPR GNVEVLLLHQ RHKWRVLFVG  300
ERSSCGLGPG WKYFAVDNEL KIGDTCIFEL EDKVNYILKV HIRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-12B3 family protein