PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_169305g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 382aa    MW: 43104.7 Da    PI: 4.5777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_169305g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1999152356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t eq++ Le+ Fe + ++  e++ +LA++lgL+ rqV +WFqNrRa++k
  MA_169305g0010  99 KKRRLTIEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWK 152
                     66789************************************************9 PP
2HD-ZIP_I/II130.46.8e-4299189292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl+ eqv++LE+sFe e+kLepe+K +la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk++ydalk++ e L++e+e++r+el+
  MA_169305g0010  99 KKRRLTIEQVRSLERSFEIETKLEPEKKIQLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKASYDALKSDFEGLQQENENIRAELE 189
                     9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1987156IPR009057Homeodomain-like
PROSITE profilePS5007117.70294154IPR001356Homeobox domain
SMARTSM003897.8E-1896158IPR001356Homeobox domain
PfamPF000463.5E-1699152IPR001356Homeobox domain
CDDcd000861.25E-1799155No hitNo description
Gene3DG3DSA:1.10.10.601.1E-19100161IPR009057Homeodomain-like
PRINTSPR000311.3E-5125134IPR000047Helix-turn-helix motif
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5134150IPR000047Helix-turn-helix motif
PfamPF021833.0E-17154195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGHPSIGDKT PPSYMNPNQD KVSQIAENSD SAANSSKQPT TPHSPHACPT PGNNFRSNLG  60
MNINDHTYNL SPMANSGNPE EHMDEDAVDE FMNYQPESKK RRLTIEQVRS LERSFEIETK  120
LEPEKKIQLA QELGLQPRQV AIWFQNRRAR WKTKQLERDY SVLKASYDAL KSDFEGLQQE  180
NENIRAELEG LKEKIEDADC CKEDDHSDMG TSTKVTSTIE NSKKLAADVA GEENDLDIKP  240
FSDFTLIFKE KDMGSEKMDI KPFRVMLSNE KEGSFSPDSD CSANIRNEDK NPPHQILSQL  300
AQTSSSMKYP SGTNNIAGMD SINDQGLMHL AEALCGMGLP PKAYQQLFRM DEGYLHEDAC  360
NHFANEEDQG GASTLPWWEY WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1156751e-113BT115675.1 Picea glauca clone GQ03704_C24 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-40homeobox protein 5