PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MA_16752g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 274aa MW: 28908 Da PI: 9.1189

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_16752g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.6	7.3e-41	105	220	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+++tgt++++a+ + ++s +ss+s+ s++ MA_16752g0010 105 PAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIIAATGTGTIPANYStLNVSLRSSNSSISAShhtkalpl 200 6899*****************************************************************777655555555552222222233333 PP TCP 89 ...................k 89 + MA_16752g0010 201 afhgtlglgpnvdmgarldH 220 33333333333333222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-39	110	217	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.07	111	165	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MESGGGGDHG RPPLKLSSSS QEPTMASTSA SASAYEGRGG LVGSYVPTSS TSRVDSHMNI 60 ASTQPVDASL AMSMSSATTS NNETPISTSQ QQQETVALDP NKKAPAKRSS TKDRHTKVDG 120 RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQHAEP AIIAATGTGT IPANYSTLNV 180 SLRSSNSSIS ASHHTKALPL AFHGTLGLGP NVDMGARLDH QLRARNEWER AENRTSMELA 240 VAANRQSEDR RLQIGGGGGE MGHGGGGDHM LGFH

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071008.1	2e-52	transcription factor TCP15
Refseq	XP_021890638.1	2e-52	transcription factor TCP15
Refseq	XP_021901654.1	8e-52	transcription factor TCP8-like
Swissprot	Q9C518	6e-47	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0D6R148	1e-105	A0A0D6R148_ARACU; Uncharacterized protein
STRING	evm.model.supercontig_128.6	8e-52	(Carica papaya)
STRING	evm.model.supercontig_30.48	3e-51	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	5e-43	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]