PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16728g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 438aa    MW: 50708.9 Da    PI: 6.0797
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16728g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.97.7e-2593189186
       trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                    +Wt++ v++Li++++ ++e+   ++          +kk++W++vs++m+e+g+++sp+qC++k+++lnkryk++++  +++ +++++++ +++d++
  MA_16728g0010  93 KWTDDIVRLLITVVSFVGEDTDCTNdgnkrkagilQKKGKWKSVSRVMMEKGYNVSPQQCEDKFNDLNKRYKRLNDVLGRGtACTVVENPSLLDSM 188
                    7**************55555553333335557888**********************************************55************9 PP

       trihelix  86 e 86 
                    +
  MA_16728g0010 189 D 189
                    8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-2191215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDGTMLSGGP SSFDALQLHH LSRQHPVMVG PISVVHPHVS TSQEANGQQH CVALGNPRNL  60
KAKPPLSDED ERSEDGTEAH MGKKGSSLWH RMKWTDDIVR LLITVVSFVG EDTDCTNDGN  120
KRKAGILQKK GKWKSVSRVM MEKGYNVSPQ QCEDKFNDLN KRYKRLNDVL GRGTACTVVE  180
NPSLLDSMDH LTPKAKEDVR KILSSKHLFY REMCSYHNGG RIHAESDHSV MPAWANLRSG  240
ERNEEIRPMT EEMDDEENED EDTEDEEEDE ENDENEGGFE MEGGVGEFMK RPRMIQGMYF  300
GTQEGERLNT LYNFNQEMMG VLQDGTRTEW QKRQWMRNRT MQLAEQKVGI QARAFELEQQ  360
CLKWKRLRSK KDREFDRLKL ENERMKLETE QLKLQLKKKE LGFESKRSDA SISSLSALHM  420
DQMHRREQHD IHSEERVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369378KKDREFDRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038590.0BT103859.1 Picea glauca clone GQ02803_C08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246931.11e-107PREDICTED: uncharacterized protein LOC104590097
RefseqXP_010246932.11e-107PREDICTED: uncharacterized protein LOC104590097
RefseqXP_010246933.11e-107PREDICTED: uncharacterized protein LOC104590097
TrEMBLA0A0D6R0051e-128A0A0D6R005_ARACU; Uncharacterized protein
STRINGXP_010246931.11e-107(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-66