PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16489g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32262.4 Da PI: 5.4416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.4e-09 | 102 | 145 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ +++ +++Lr+++P+ + K++K +i++ A+ Y+ +Lq MA_16489g0010 102 HTERKRRKILKETLFKLRSVVPNiS------KMDKQSIVQDAISYVLDLQ 145 57*********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.20E-9 | 94 | 149 | No hit | No description |
PROSITE profile | PS50888 | 13.865 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 98 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-8 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 102 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-12 | 103 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
DMSNIGSVGL YENLSGQTSS YSEPNTVESQ TDQNPAISVC SEDLAMDHQN SKLWMDMDEN 60 SGQFEWDDNN AEIVGSNPAI KTYNTDGRVV QWQQRQTSKN LHTERKRRKI LKETLFKLRS 120 VVPNISKMDK QSIVQDAISY VLDLQKKVRE IEDEIHALSS SNRPDHNQAI TSETTKPNDN 180 CASIKSADMK KSSNKLIKQG KILEVEICNV GEGAIYHVRI EGKKEAGLLV KLARALETLP 240 LHIMNSNFCC FDEAIVSTLT LNGSSMKILG ADKLEDMIRQ TIDSIWLG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101917 | 0.0 | BT101917.1 Picea glauca clone GQ0133_F10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LRN6 | 1e-90 | B8LRN6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 4e-24 | bHLH family protein |