PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_161092g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WOX

Protein Properties

Length: 290aa MW: 32676.9 Da PI: 6.5761

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_161092g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	17	77	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++ ++ql++Le+l++ n p++++++e++++l ++e++V++WFqNr+a+ k+ MA_161092g0010 17 RQRWAPGQKQLQILERLYADgNGIPNRHKIREITSELsqhgPISESNVYNWFQNRKARAKR 77 89***************99**************999***************97 PP
2	Wus_type_Homeobox	89	4.9e-29	16	79	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P ++Q++iLe+ly G Pn+++i++it+eL+++G i++ NV++WFQNrkaR ++kq MA_161092g0010 16 TRQRWAPGQKQLQILERLYADGNGIPNRHKIREITSELSQHGPISESNVYNWFQNRKARAKRKQ 79 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.58E-15	10	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.491	13	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-13	15	81	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-10	15	82	IPR001356	Homeobox domain
CDD	cd00086	5.41E-9	17	79	No hit	No description
Pfam	PF00046	2.9E-15	17	77	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MLYDQPVTGP GCRPSTRQRW APGQKQLQIL ERLYADGNGI PNRHKIREIT SELSQHGPIS 60 ESNVYNWFQN RKARAKRKQQ RLPQKEGESE DNSDGESSRE KKHKIDDEFY KEDAGYSEKN 120 ADACENRHGI FLMGSGQAEA RPQIHDRNHD MSNIGLRHVD TDGHVFEKNY GVFNQKTHAN 180 DQQQFDSTRE NVSSSLLCFQ TEADLNSDTL LERTGNAAIV SNENDQQGSR VMTVLVDGKQ 240 VEVSAGVVDV RRTFGGTAEL LDSHGHVVPT NGMGMTFHPL HGSESYTLRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2I4KAM9	1e-169	A0A2I4KAM9_PINPS; WUSCHEL homeobox protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	8e-21	WUSCHEL related homeobox 14