PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_15687g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 38099.4 Da PI: 6.7839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed l+++v+ G g+W+t+a+ g++Rt+k+c++rw++yl MA_15687g0010 23 RGPWTVDEDMNLIRCVTTRGEGRWNTVAKWAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l++++++++G++ W++Iar ++ gRt++++k++w++ MA_15687g0010 76 RGNITPEEQILILELHRLWGNR-WSKIARQLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.705 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-29 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-11 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-14 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-8 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.403 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 78 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.01E-11 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MTKATSCAAA TIRDDQEEQS VRRGPWTVDE DMNLIRCVTT RGEGRWNTVA KWAGLKRTGK 60 SCRLRWLNYL RPDVKRGNIT PEEQILILEL HRLWGNRWSK IARQLPGRTD NEIKNYWRTR 120 IKKHIQKAHC DANPKQLEDS VRYSWLSAIL QQKGIESSNQ SAQAASSSEI IRPSELDYML 180 SQYKWMSSLE TENAGINEPG YSLNPASFRT SQGSLCRRDY LNQNSRTTFQ DGRDMDQPIS 240 EKQNCYNHQS VFDYSNANSV HHEISQAISP SEVGIDNDMS ALVHPIMISE SEELKDLHES 300 AAGFGIQYVN SEAQASSCNN QMSGIEMNWP HELA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 23 | 125 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086902.1 | 1e-69 | transcription factor MYB108-like | ||||
Refseq | XP_020086903.1 | 1e-69 | transcription factor MYB108-like | ||||
TrEMBL | A0A444GDX9 | 2e-66 | A0A444GDX9_ENSVE; Uncharacterized protein | ||||
TrEMBL | M0RU13 | 3e-66 | M0RU13_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P20830_001 | 4e-67 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 6e-62 | myb domain protein 112 |