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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_15254g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 555aa MW: 60578.5 Da PI: 9.2844 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88.9 | 1.2e-27 | 100 | 289 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 +g+kdrhsk+ T++g+RdRRvRls ++a++++dLqd+L + ++s +++WL+++ak ai elt + MA_15254g0010 100 TGGKDRHSKVRTAKGLRDRRVRLSGPTAIQLYDLQDRLCLEQPSMAVDWLIKAAKSAIYELTVQdaemasasagnlaltssncssveycvgspres 195 689*************************************************************77766666666665555544444444444444 PP TCP 66 ...ssssaseceaesssssasnsssg...........................................kaaksaa.kskksqksaasalnlakes 114 + ++++s+ + ++++ +++ ++ + s MA_15254g0010 196 ataA---------------------AasgltafrvglsspkaqgtdshnaisgkaisttnlkesdlarsSSSTSDGsIKGSAEHTSNCSMSKPAAS 270 3330.....................03334444444555555555555566667777777888888887555555557778888888888888899 PP TCP 115 rakarararertrekmrik 133 r +ar +arer r k + MA_15254g0010 271 RREARLKARERARRKSASA 289 9999999999999987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-31 | 101 | 286 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.776 | 102 | 160 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MLSNSLEDLQ AGFMGVNNKE PEVEIYSKDQ AAFSESINGN RLSEEYTNGR RKHYNNKLQD 60 NGKGSKRKAG EMERKARVIE IQPRNKVEQD SRIVRLSRLT GGKDRHSKVR TAKGLRDRRV 120 RLSGPTAIQL YDLQDRLCLE QPSMAVDWLI KAAKSAIYEL TVQDAEMASA SAGNLALTSS 180 NCSSVEYCVG SPRESATAAA ASGLTAFRVG LSSPKAQGTD SHNAISGKAI STTNLKESDL 240 ARSSSSTSDG SIKGSAEHTS NCSMSKPAAS RREARLKARE RARRKSASAQ NSVGSPPAIQ 300 QLNSMKPSLT SLLKSSFLYP TLALESHCSK DDNPCGTHTQ VLSGIDSVQQ LWGYNNMPSY 360 TDMLCTQDSH PLQNMPSYST SALQKSLPPA PSTSASIQAV MESSYIQSYE MADSAIPFFY 420 PKQVLHLGGN GAQGQANLYY SSPPNTIMKR VEQQPQTLIR HFCSTSVPTL SNDIHLLTSS 480 LSGRGPLQSN SSSITNMPSL SHAQNHAYRE ASAKAAHDFG SLRDDDDRAF QEYQNAQDNV 540 KYGHNQLWAK QKEHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-15 | 107 | 160 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-15 | 107 | 160 | 1 | 54 | Putative transcription factor PCF6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 4e-28 | plastid transcription factor 1 |