PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27338.3 Da PI: 8.5509

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_13933g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.1	1.7e-26	11	61	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskR++g+ KKA+ELS+LC aeva+iifss+gk yeyss MA_13933g0010 11 KKIENLTNRQVTFSKRKAGLQKKAKELSILCSAEVALIIFSSSGKHYEYSS 61 68***********************************************96 PP
2	K-box	45.1	4.2e-16	101	162	28	89
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 i L+r +Rhl G dLesLs++eLq+Le+qLe +++R+k+ + + eq+e + + +e ++ MA_13933g0010 101 IVGLRRVIRHLTGGDLESLSVNELQKLEDQLEIVTSRVRKKRFQRMQEQLEAMTQELEESKR 162 56799**********************************************99766555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.09	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.3E-38	3	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-31	4	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.05E-42	4	81	No hit	No description
PRINTS	PR00404	1.9E-27	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-23	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-27	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-27	40	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	11.088	87	176	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.6E-11	102	163	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MRMGRGKIEI KKIENLTNRQ VTFSKRKAGL QKKAKELSIL CSAEVALIIF SSSGKHYEYS 60 SPCSSVEQIV EKYMNVSGSK LGEDQINTLI DGCVVKGDIE IVGLRRVIRH LTGGDLESLS 120 VNELQKLEDQ LEIVTSRVRK KRFQRMQEQL EAMTQELEES KRRLRYNEGF TQKKNDLYMF 180 SDCRGSLGET VDDYPFCQDK NPIYVTPSAP VFCVQPGQPH LHETDYRYLD LKLGYNRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-18	3	90	1	84	MEF2 CHIMERA
6bz1_B	1e-18	3	90	1	84	MEF2 CHIMERA
6bz1_C	1e-18	3	90	1	84	MEF2 CHIMERA
6bz1_D	1e-18	3	90	1	84	MEF2 CHIMERA
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF158541	0.0	AF158541.1 Picea abies clone DAL12-1 MADS-box transcription factor (DAL12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q9SEE1	1e-174	Q9SEE1_PICAB; MADS-box transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61120.1	5e-36	AGAMOUS-like 13

Publications ? help Back to Top
Sundstr MADS-box genes active in developing pollen cones of Norway spruce (Picea abies) are homologous to the B-class floral homeotic genes in angiosperms. Dev. Genet., 1999. 25(3): p. 253-66 [PMID:10528266]