PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_13676g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 515aa MW: 55542 Da PI: 7.5523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.2e-09 | 339 | 387 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq MA_13676g0010 339 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 387 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.02E-11 | 334 | 391 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-17 | 334 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 336 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 337 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-6 | 339 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 342 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MGDQEKSAFV NFHTAGFGSS SAMMNPVITE SSSKATALQN AKCSLPNPSY FSWDSSMAMQ 60 SKGAMGSSSL MNNACEPKNN GSHDIVIGRS VGSSCSLPLR SSVAWNAPKG GILATQNISQ 120 LSSDNGFAER AARLSCFGVG GGPLNLSEPA SAPFHRSVID NSAMSRIPRP NMSELTKVSD 180 TSLSKEEVCA AETGVRKAGR LSRSSTPGLG TSGNESDDAE VSTAHEESSS SDQITSEAAP 240 NAFNGRKRKQ MQKDKAKDFA SLQAEKDTQS TESDGLKGMK YKVVEGVKEK DDVKYKVEQN 300 ASAKTGEGSP KQGKDNIQNS EQPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ 360 DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLAAV NPRMDFNIEG ILAKDMLQSP 420 TMVFASDTST SYPQLHQPQQ GLVQVGTEGH GIVNQTEALR RTINAQIACI DGYGDVNAQL 480 SHVWDNELQS VVQMGFVQNN HTPLTSQGNS DKLKT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113151 | 0.0 | BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLM2 | 1e-145 | B8LLM2_PICSI; Uncharacterized protein | ||||
STRING | ERN10031 | 1e-106 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 8e-70 | bHLH family protein |