PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

MA_135627g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 902aa MW: 100667 Da PI: 9.3387

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_135627g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.4e-07	14	42	4	32
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg 32 W t+E++ll+ av+++G+ +W++I++++ MA_135627g0010 14 WGTWEELLLAGAVERHGTQNWELISEELR 42 **************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.295	6	64	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.9E-4	10	45	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-4	14	60	No hit	No description
Pfam	PF00249	1.7E-6	14	44	IPR001005	SANT/Myb domain
SuperFamily	SSF47370	9.03E-21	534	654	IPR001487	Bromodomain
SMART	SM00297	1.9E-17	541	652	IPR001487	Bromodomain
CDD	cd04369	1.75E-16	551	647	No hit	No description
Gene3D	G3DSA:1.20.920.10	1.3E-17	555	652	IPR001487	Bromodomain
Pfam	PF00439	4.8E-12	557	632	IPR001487	Bromodomain
PROSITE profile	PS50014	12.016	563	633	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MNGRRREEEE ERMWGTWEEL LLAGAVERHG TQNWELISEE LRARIVSPYV FSPEACKVKY 60 DALRRRFNGH SENPDRSNDD GNSVLLEVLR ARRIAQLKTE EIPLKNDSIG SLESELRRLK 120 AGEDSKQGSE RSKDRSSAGS FTEAAPDGSE TVAWASLAKH QRIETVGEID KSEGIQSDRI 180 GPDQESNPSP VERGSPKRDP DRNEEKKAAE SVPVPVPVPV PVPVPASGPL PASRTEGGAK 240 NQHPISEVHP SSPLDSFYGS SETLADEKEN RRSRHDFVES KDSNIKGRRL RTDLALKKTD 300 LRSCRRPSGN GSHRVLMPHK PKTEDFDAET AHRSNPQQNP DDDDDDYPPP GSSPVKSEPD 360 RNGDGDQDQA SIGCTENSEL HTVDTNASER SSAAIRRARR KQGKKNPAAF GVTTTDSETS 420 RQKHDEVRTE EGSAESMDIE RKEFKGTRDE CQKGLTVDSD VLSSANPAEI SNRKGTKAFS 480 SSREASESGH RHRHGQGQGH YKECEEFTDA WNQTARSSGD SHMEDRMEGT DEIETSPMSR 540 RSRREPKVPG KLLPLLECLR TITSHKFGSL FKHKLESQNK QQYKNMIRRH MDLGMIRARL 600 EEGSYSGSLE FFRDLLLVFN NALIFYHKSS QENGAAWVLR QLANNEMAKI FQTEALLKQE 660 GPSTRKRDPR PTPGPSANPS KFNPSSRKRN ARPLSGGGRV AGRPKSTTRL NTREEHYNSQ 720 EPPKEAIEVS SSTGLKPEIE QEENFEAEAI NLSKMPKVGD ERKTSGSSIQ PKKGSGFHID 780 PKKNSNTESK KATISNIPLV ESRNNSNYHK NNSDNHHNNN NGRSPEDFLG KGAAMKEEKG 840 IRPPEPTHKQ RATDRDHLPP LKRGVGRPPK HAKRASGAYD QLPSKTTGDP EASSRPRKKL 900 RK

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MNGRRREEEE ERMWGTWEEL LLAGAVERHG TQNWELISEE LRARIVSPYV FSPEACKVKY  60
DALRRRFNGH SENPDRSNDD GNSVLLEVLR ARRIAQLKTE EIPLKNDSIG SLESELRRLK  120
AGEDSKQGSE RSKDRSSAGS FTEAAPDGSE TVAWASLAKH QRIETVGEID KSEGIQSDRI  180
GPDQESNPSP VERGSPKRDP DRNEEKKAAE SVPVPVPVPV PVPVPASGPL PASRTEGGAK  240
NQHPISEVHP SSPLDSFYGS SETLADEKEN RRSRHDFVES KDSNIKGRRL RTDLALKKTD  300
LRSCRRPSGN GSHRVLMPHK PKTEDFDAET AHRSNPQQNP DDDDDDYPPP GSSPVKSEPD  360
RNGDGDQDQA SIGCTENSEL HTVDTNASER SSAAIRRARR KQGKKNPAAF GVTTTDSETS  420
RQKHDEVRTE EGSAESMDIE RKEFKGTRDE CQKGLTVDSD VLSSANPAEI SNRKGTKAFS  480
SSREASESGH RHRHGQGQGH YKECEEFTDA WNQTARSSGD SHMEDRMEGT DEIETSPMSR  540
RSRREPKVPG KLLPLLECLR TITSHKFGSL FKHKLESQNK QQYKNMIRRH MDLGMIRARL  600
EEGSYSGSLE FFRDLLLVFN NALIFYHKSS QENGAAWVLR QLANNEMAKI FQTEALLKQE  660
GPSTRKRDPR PTPGPSANPS KFNPSSRKRN ARPLSGGGRV AGRPKSTTRL NTREEHYNSQ  720
EPPKEAIEVS SSTGLKPEIE QEENFEAEAI NLSKMPKVGD ERKTSGSSIQ PKKGSGFHID  780
PKKNSNTESK KATISNIPLV ESRNNSNYHK NNSDNHHNNN NGRSPEDFLG KGAAMKEEKG  840
IRPPEPTHKQ RATDRDHLPP LKRGVGRPPK HAKRASGAYD QLPSKTTGDP EASSRPRKKL  900
RK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	894	900	RPRKKLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R6X0	1e-112	A0A0D6R6X0_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	2e-23	DNA-binding bromodomain-containing protein