PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_13408g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 244aa    MW: 26617.6 Da    PI: 6.701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_13408g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174392255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +g+Wv+eIr p     +  +r++lg++ tae Aa+a++aa ++l+g
  MA_13408g0010 43 QYRGVRMRR-WGSWVSEIRAP-----HqkTRIWLGSYSTAEAAARAYDAALLCLKG 92
                   69****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-1943102IPR016177DNA-binding domain
SMARTSM003801.3E-3343106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3043102IPR001471AP2/ERF domain
PROSITE profilePS5103222.02343100IPR001471AP2/ERF domain
CDDcd000181.37E-1843102No hitNo description
PRINTSPR003672.1E-94455IPR001471AP2/ERF domain
PfamPF008471.2E-104492IPR001471AP2/ERF domain
PRINTSPR003672.1E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVCRSNESEC QQNVSIGSQQ HSERRECQVS SKARKKISRG SGQYRGVRMR RWGSWVSEIR  60
APHQKTRIWL GSYSTAEAAA RAYDAALLCL KGSSAAFNFP ESATIVHPPQ SCQPPLMSPR  120
SIQKMAAAAA YASPPADLAG SNGVDCTSQS LQVSLDSIVK TVVGTETMAN TTNSNGDVGA  180
MEEISLLEQF LESASRDNNY GIYDHQMLCC ALQSSDPTPL SNWVDESYGQ DHHHHDLGGL  240
WSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14421001372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB2CSN52e-35B2CSN5_TAXCU; Transcription factor AP2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-25ERF family protein