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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_133946g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 671aa MW: 75301 Da PI: 8.0334 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.1 | 1.4e-10 | 330 | 409 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ v aL++ +++ + rg+l k++W+++++++ g + qCk kw l+k y k+k++++ s++++f+++e MA_133946g0010 330 WPNSAVDALLRKFEDLCFNKHRGQLGKKHWDRIAAAVnVICGTDYTGMQCKYKWHRLKKMYNKEKQRNEP------SKWAFFRHVE 409 *************************************55679999***********************97......5899*99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-12 | 329 | 410 | No hit | No description |
PRINTS | PR01911 | 1.5E-13 | 570 | 587 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
Pfam | PF03162 | 4.0E-21 | 570 | 638 | IPR004861 | Protein-tyrosine phosphatase, SIW14-like |
SuperFamily | SSF52799 | 3.14E-12 | 570 | 641 | IPR029021 | Protein-tyrosine phosphatase-like |
Gene3D | G3DSA:3.90.190.10 | 1.4E-8 | 572 | 634 | IPR029021 | Protein-tyrosine phosphatase-like |
PRINTS | PR01911 | 1.5E-13 | 607 | 620 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
PRINTS | PR01911 | 1.5E-13 | 626 | 640 | IPR020428 | Protein-tyrosine phosphatase SIW14-like, eukaryotic |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MASPVSESQR TLQLLEEPPE EKPTSSTSVK TCKHGDNQEP NNNVNNDNKN SNNDCNNSNN 60 KKDPGQPQEN SNQGDPNNVK TVEEKPAVTP SSPVQPQSNQ EEPISNSRAV GSPSEGEHGA 120 QMNGNRRAVQ EGSCSSPPRA QPQEHGKAVG NPKAVHERLM ASSTSSQGNH IVMDPSTCLR 180 SRFPIPAYPT GSGLGPYVSC VDRKEDVVPL RGSNIGRESG SGTLLSREQL RIGQENTSRQ 240 QEPVSIPRAV YERIMSSPFR QGFVQLQDSA SNPRQLQALS EASQQWLRSH VINVDELMQS 300 PNAVRQPGQA NEGKKRKERE VTKVQKEELW PNSAVDALLR KFEDLCFNKH RGQLGKKHWD 360 RIAAAVNVIC GTDYTGMQCK YKWHRLKKMY NKEKQRNEPS KWAFFRHVEH IVQKSSKSPA 420 IQNDLQNDLQ NDLQNDSNEE ECPNDVDTTC DAASNESNHE EPSIQTKSAS PLNAIRDEEK 480 RPKKKRVPLK SFGQRMERSM THLANTVSNI EKTRTAEIKK LLDTQLQIAS MMVQGMRELK 540 QGVGMIGCND LAVSQREFVL QQQEGCNERY VPPSNFAMVD KRVYRSGFPN NKNFPFLETL 600 QLNSIICLCP EPYPEANLEF LRTHGIRLFH IGMERYKVSD HEILLSCNGF EGGTWYYNGS 660 VSKAPRGEMC T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1xri_A | 3e-24 | 571 | 646 | 3 | 83 | At1g05000 |
1xri_B | 3e-24 | 571 | 646 | 3 | 83 | At1g05000 |
2q47_A | 3e-24 | 571 | 646 | 3 | 83 | Probable tyrosine-protein phosphatase At1g05000 |
2q47_B | 3e-24 | 571 | 646 | 3 | 83 | Probable tyrosine-protein phosphatase At1g05000 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104154 | 0.0 | BT104154.1 Picea glauca clone GQ02807_A04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9S3W7 | 0.0 | A0A0C9S3W7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_28300_3083 transcribed RNA sequence |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 2e-08 | Trihelix family protein |