PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_133015g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 30239.9 Da PI: 9.9267 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 3.9e-07 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk+F ++s+Lk H + H MA_133015g0010 114 HDCSECGKRFATPSSLKDHRNEH 136 56******************998 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 142 | 166 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC ++F++k +L rH+++H MA_133015g0010 142 YNCKfeDCAMCFKSKQLLCRHLKKH 166 88**********************9 PP | |||||||
3 | zf-C2H2 | 14.1 | 0.00013 | 170 | 194 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC Cgk+F ++ L +H++ H MA_133015g0010 170 HKCMfeGCGKRFAFRERLIVHQKIH 194 6888889****************99 PP | |||||||
4 | zf-C2H2 | 18.3 | 6.4e-06 | 201 | 224 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+F+ +L+ H rtH MA_133015g0010 201 VCPweGCGKRFKWTNSLQGHKRTH 224 79999******************9 PP | |||||||
5 | zf-C2H2 | 19.3 | 3.1e-06 | 230 | 254 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cg++F k +L+rH+rtH MA_133015g0010 230 FQCTyqGCGRHFGYKVDLTRHLRTH 254 89**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-8 | 111 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.37E-11 | 112 | 166 | No hit | No description |
SMART | SM00355 | 0.0039 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.272 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 134 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.162 | 142 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.073 | 142 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 14.212 | 170 | 199 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0085 | 170 | 194 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-9 | 170 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 172 | 194 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.34E-17 | 181 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-16 | 193 | 222 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.96 | 200 | 229 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.0E-4 | 200 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 202 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-16 | 223 | 256 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.9E-9 | 225 | 256 | No hit | No description |
PROSITE profile | PS50157 | 13.027 | 230 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.5E-4 | 230 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
HQKLMRIACD QHNGSVEQFI IATLNASEVA GMSGKKAVIK KPTLSKWKRT RFEQMKGSET 60 QELAMAFRLL AASTPGSGVT SEFLSIPWQE LTMSQIEKML EETKKMLFLN EKVHDCSECG 120 KRFATPSSLK DHRNEHSGDK PYNCKFEDCA MCFKSKQLLC RHLKKHECAH KCMFEGCGKR 180 FAFRERLIVH QKIHSNERPL VCPWEGCGKR FKWTNSLQGH KRTHTGEKPF QCTYQGCGRH 240 FGYKVDLTRH LRTHNGQPAR ASH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 6e-29 | 106 | 257 | 14 | 188 | Aart |
2i13_B | 6e-29 | 106 | 257 | 14 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109923 | 0.0 | BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002983078.2 | 1e-118 | zinc finger protein 26 | ||||
TrEMBL | A0A1Y1ISJ7 | 1e-112 | A0A1Y1ISJ7_KLENI; Uncharacterized protein | ||||
STRING | EFJ33248 | 9e-77 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP15242 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 3e-26 | C2H2 family protein |