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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_130948g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | AP2 | ||||||||
Protein Properties | Length: 706aa MW: 77247.8 Da PI: 6.622 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 252 | 301 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g MA_130948g0020 252 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 301 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.2 | 4.1e-13 | 344 | 394 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g MA_130948g0020 344 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDQAAIKCNG 394 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-16 | 252 | 310 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 252 | 301 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 253 | 310 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-33 | 253 | 315 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.63E-11 | 253 | 311 | No hit | No description |
PROSITE profile | PS51032 | 17.873 | 253 | 309 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.97E-24 | 344 | 404 | No hit | No description |
Pfam | PF00847 | 1.4E-8 | 344 | 394 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-16 | 344 | 404 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-15 | 345 | 402 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-30 | 345 | 408 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.079 | 345 | 402 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 346 | 357 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 384 | 404 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MSTCEAPAEI STEWDLNLTP AVPDEYVLAV NCTNPNFLRE PHEVNALSSK AEESGSVCDE 60 TSINPAITVA KSELEPWTSG TGELSFIRRA ENCRDDSGTS NSSVVNAPVI DNRIKNDGSL 120 YLECEDSANQ AIESPSRSND INNLGQSKTV SSKLFGCLMT VNALAGSEMN THSQGQPDTC 180 ITHQFSVVNR ALDSVSSPPL EEIRGPVNQF SRSLWGDHLV SSQTDSSGTP NPPTVPIQAV 240 KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR 300 GQDADINFNL SDYEEDLKQL NNLTKEEFVH ILRRQSNGFS RGSSKYRGVT LHKCGRWEAR 360 MGQFLGKKYI YLGLFDNEIE AARAYDQAAI KCNGREAVTN FDPSVYQNKL LTEGNSSSFD 420 QNLDLSLGIS APTVLDTSVS GDNKIGGLKV KTSTDIVVEP DWKKARCAIS TPEDGSQQTQ 480 LEAPFPYGQL GQYVGLQNRE TFFSQGKQTP FTFLPQYQIH QPNSEKIQVK GNLTYNPLRL 540 LPNPKDDSIH LALEQQGLWS RVCPLSFPNY KLYSPTGGLQ GQGGSGLSPL LSSSIEHQPG 600 WPWKCYTNGS SASMLAAASS GFSPQAQTTL AHPSDWMHKL QGFQYPSGQS MGTQLSAPKP 660 SSQRQNLHST DASSSGQVLG LSLSISTKSI AEPCSSKDND GSKFLK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676730 | 0.0 | EF676730.1 Picea sitchensis clone WS0274_I13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLT5 | 0.0 | B8LLT5_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-95 | AP2 family protein |