PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_12866g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 30483.3 Da PI: 6.7974

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_12866g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.6e-18	50	100	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq++ Le+ Fe+++++ e++ +LA++l+L+ rqV vW+qNrRa++k MA_12866g0010 50 RLSVEQTKSLETSFEMESKLGPERKMKLAAELRLEPRQVAVWYQNRRARWK 100 6889**********************************************9 PP
2	HD-ZIP_I/II	110.6	1.1e-35	47	138	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k +rls eq k+LE+sFe+e+kL perK++la eL+l+prqvavW+qnrRAR+k+kqlEkdy+ Lk+ y + ++e+++Le ev +L+eel++ MA_12866g0010 47 KIKRLSVEQTKSLETSFEMESKLGPERKMKLAAELRLEPRQVAVWYQNRRARWKAKQLEKDYHNLKQLYHTAVSEKRKLEWEVLRLTEELHA 138 669************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-17	31	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-17	34	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.71	42	102	IPR001356	Homeobox domain
SMART	SM00389	2.5E-14	44	106	IPR001356	Homeobox domain
CDD	cd00086	8.96E-13	46	103	No hit	No description
Pfam	PF00046	5.7E-15	50	100	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSFGNLDIDL MVKNPASRPV SIQPLYEAGK SGNSYDEIGP DYEKEKKIKR LSVEQTKSLE 60 TSFEMESKLG PERKMKLAAE LRLEPRQVAV WYQNRRARWK AKQLEKDYHN LKQLYHTAVS 120 EKRKLEWEVL RLTEELHAMK KSRPGPKDFE QISTSDDNLN DTLMTPIGTI DRPKSNNSCC 180 SDAASKSKVS PTEFDLVIKR ERESPSQKAQ ILQNKLSSTN DHKQTGQEAI DDLTIMSDDF 240 YNYFMVLDHD HQGYSSVCNF DWPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	102	RRARWKAKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113184	0.0	BT113184.1 Picea glauca clone GQ03326_O14 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NYL7	1e-34	A9NYL7_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-27	HD-ZIP family protein