PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12866g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30483.3 Da    PI: 6.7974
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12866g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.6e-1850100656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ eq++ Le+ Fe+++++  e++ +LA++l+L+ rqV vW+qNrRa++k
  MA_12866g0010  50 RLSVEQTKSLETSFEMESKLGPERKMKLAAELRLEPRQVAVWYQNRRARWK 100
                    6889**********************************************9 PP
2HD-ZIP_I/II110.61.1e-3547138293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    k +rls eq k+LE+sFe+e+kL perK++la eL+l+prqvavW+qnrRAR+k+kqlEkdy+ Lk+ y + ++e+++Le ev +L+eel++
  MA_12866g0010  47 KIKRLSVEQTKSLETSFEMESKLGPERKMKLAAELRLEPRQVAVWYQNRRARWKAKQLEKDYHNLKQLYHTAVSEKRKLEWEVLRLTEELHA 138
                    669************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1731103IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1734104IPR009057Homeodomain-like
PROSITE profilePS5007115.7142102IPR001356Homeobox domain
SMARTSM003892.5E-1444106IPR001356Homeobox domain
CDDcd000868.96E-1346103No hitNo description
PfamPF000465.7E-1550100IPR001356Homeobox domain
PROSITE patternPS00027077100IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSFGNLDIDL MVKNPASRPV SIQPLYEAGK SGNSYDEIGP DYEKEKKIKR LSVEQTKSLE  60
TSFEMESKLG PERKMKLAAE LRLEPRQVAV WYQNRRARWK AKQLEKDYHN LKQLYHTAVS  120
EKRKLEWEVL RLTEELHAMK KSRPGPKDFE QISTSDDNLN DTLMTPIGTI DRPKSNNSCC  180
SDAASKSKVS PTEFDLVIKR ERESPSQKAQ ILQNKLSSTN DHKQTGQEAI DDLTIMSDDF  240
YNYFMVLDHD HQGYSSVCNF DWPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102RRARWKAKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131840.0BT113184.1 Picea glauca clone GQ03326_O14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYL71e-34A9NYL7_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-27HD-ZIP family protein