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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_128658g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | DBB | ||||||||
Protein Properties | Length: 293aa MW: 32059.1 Da PI: 6.3016 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 1e-07 | 5 | 49 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e+++ C ++ lC C + H H++vpl MA_128658g0010 5 VQCDVCENAEATFLCCADEAALCSVCDNKVHAAnklaskHQRVPL 49 57*****************************66899999999986 PP | |||||||
2 | zf-B_box | 32.1 | 2.3e-10 | 55 | 96 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 + +kC+ ++ek +fC +++ llC++C +++H + H MA_128658g0010 55 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSIH-SlnnlvaaH 96 789******************************.434455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-13 | 2 | 49 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.808 | 2 | 49 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.0E-6 | 5 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.88E-8 | 5 | 49 | No hit | No description |
SuperFamily | SSF57845 | 5.26E-5 | 49 | 89 | No hit | No description |
SMART | SM00336 | 4.9E-15 | 54 | 101 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.428 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-8 | 55 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.27E-9 | 57 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKMKVQCDVC ENAEATFLCC ADEAALCSVC DNKVHAANKL ASKHQRVPLI NPSSQSPKCD 60 ICQEKTGYFF CLEDRALLCR QCDVSIHSLN NLVAAHQRFL VTGVKVGLEP SNTISSSTNT 120 FAQSSDATHQ KPQTLKNGPR EVSATSHQGI QKGAGGGGMS RKGTVSEYFS ELLPLLRMDE 180 FLNLPELDNG YSFDEAGSSR ADNSNFVEEW TANSLSMEEV NAENCLAQVP EMPSPPTASG 240 LYWPRRVIQH PKEGKRREDL AIFGIDDASL VPDIGCRSSP PDSPLSKRRR LHA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 256 | PKEGKRR |
2 | 286 | 290 | KRRRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676829 | 0.0 | EF676829.1 Picea sitchensis clone WS02753_P02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625544.1 | 1e-80 | PREDICTED: B-box zinc finger protein 22 | ||||
TrEMBL | B8LM30 | 0.0 | B8LM30_PICSI; Uncharacterized protein | ||||
STRING | XP_009625544.1 | 4e-80 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-69 | light-regulated zinc finger protein 1 |