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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_12784g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 36191.4 Da PI: 6.995 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.4 | 3.8e-28 | 29 | 109 | 2 | 80 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 +g+kdrhsk+ T++g+RdRRvRls+++a +++dLq +LG+ ++sk+++WL++ ak ai++l+ ++s+ as++ + ++ s MA_12784g0010 29 TGGKDRHSKVLTSKGLRDRRVRLSVPTAFQLYDLQARLGYEQPSKAVDWLIKVAKSAIDDLPVLDSEMASASagNVAHLTS 109 799*************************************************************66666555321111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-28 | 30 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 31 | 89 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MKRKPAAAEI QSGRKVEKEW QIVRVSRQTG GKDRHSKVLT SKGLRDRRVR LSVPTAFQLY 60 DLQARLGYEQ PSKAVDWLIK VAKSAIDDLP VLDSEMASAS AGNVAHLTSS ISSIVEHCVG 120 SPSVFSLPLE PQSNNDDSPC GIHTHILSGT GNVQKLWNYN NMPSYTDILS TQDSYPLQNM 180 PSPLTEALQK SFQPVSATPA SSQVVIESPC LQSNEMADSA KQSRHSAVNG EQGRANIPDM 240 IMKSAEQQQQ QQAHMHFRHY ASTFVPMFSN NANCLASSSS SRGTPPSISS SITNIHALSH 300 IHKDSYAEVF ANDFFPFQEC DGGEYQEFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 36 | 90 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 36 | 90 | 1 | 55 | Putative transcription factor PCF6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 4e-32 | TCP family protein |