PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_125845g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 172aa    MW: 18774.2 Da    PI: 5.5352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_125845g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-146851398
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    s++l ++ +f+++++      k+ +l+ +sg  W v+l+  +ks +  +t+GW++Fv+++ +++gD++vF++++   f   v+vf+
  MA_125845g0010  6 SSCLGISTDFVKRMQCR--VCKDAILQGPSGHLWHVNLCCANKSAS--FTNGWESFVSDQFIEVGDILVFRHVDGVHF--AVQVFE 85
                    445999*****999644..5579***************88777765..8**********************8875666..888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196187IPR003340B3 DNA binding domain
CDDcd100173.40E-15484No hitNo description
PfamPF023629.1E-12585IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-18688IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17788IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEPNSSSCLG ISTDFVKRMQ CRVCKDAILQ GPSGHLWHVN LCCANKSASF TNGWESFVSD  60
QFIEVGDILV FRHVDGVHFA VQVFEPSGSS VPLLIDIKPN RNGDGEDGDI AAKDLKMDHT  120
LTSINSGQSN SLRNLPEFFV VLPKSAVTGT GQYRIVSFTP TVITLQNMDN TP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1256825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-10B3 family protein