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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_125845g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 18774.2 Da PI: 5.5352 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.5e-14 | 6 | 85 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s++l ++ +f+++++ k+ +l+ +sg W v+l+ +ks + +t+GW++Fv+++ +++gD++vF++++ f v+vf+ MA_125845g0010 6 SSCLGISTDFVKRMQCR--VCKDAILQGPSGHLWHVNLCCANKSAS--FTNGWESFVSDQFIEVGDILVFRHVDGVHF--AVQVFE 85 445999*****999644..5579***************88777765..8**********************8875666..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.196 | 1 | 87 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.40E-15 | 4 | 84 | No hit | No description |
Pfam | PF02362 | 9.1E-12 | 5 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-18 | 6 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 7 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEPNSSSCLG ISTDFVKRMQ CRVCKDAILQ GPSGHLWHVN LCCANKSASF TNGWESFVSD 60 QFIEVGDILV FRHVDGVHFA VQVFEPSGSS VPLLIDIKPN RNGDGEDGDI AAKDLKMDHT 120 LTSINSGQSN SLRNLPEFFV VLPKSAVTGT GQYRIVSFTP TVITLQNMDN TP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP12568 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-10 | B3 family protein |