PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_1220g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 50469.4 Da PI: 6.3089 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 245 | 292 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h Er+RR+ +N++++ Lr+l+P++ +K++ a+i A+ YIk+Lq MA_1220g0010 245 ANHFVTERQRREYLNDRYQILRSLIPNP-----TKVDRASIAGDAIVYIKELQ 292 68**************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-14 | 241 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.43 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 245 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.72E-10 | 246 | 293 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 246 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 248 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGSEIQRQLN FELEQEYNTQ IMDDVLLLRR HEISTSEQQH RQHQQQQQAN WEANIHELYE 60 MSLFQSQHGG EQHPTITSFT SPCIYNNNTS IDHRAEPNGY NTGSANYLGP ELLNLLQLPA 120 VCSTESNSVS NRSSVSKTAT MFPTPNNEAS DSINCHHESV GLYDLHHEAQ LKNLFHMNTF 180 SHPSYQLSSP NPLFCRSNLE FDSSAETAAN MQQELGGEER QFGNSLMDFK REISLFKAGD 240 HGKGANHFVT ERQRREYLND RYQILRSLIP NPTKVDRASI AGDAIVYIKE LQRTIDELKA 300 LVVHKRSRSV RGISGKLRVD NSAADMESSC QQSCDQKDTN KFMTNESLRS SWLQRTSQYG 360 TEVDVRIVHD EVTIKVVKKK CPNFVLCMTT ILQELHLDIL HASGANIGDH HVFVFNTLIC 420 EGWNVYGESI AMKLIEALDR KPAL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ710999 | 0.0 | KJ710999.1 Pinus tabuliformis clone PtbHLH1 bHLH1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M794 | 0.0 | A0A0K0M794_PINTB; BHLH1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 2e-50 | bHLH family protein |