PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_115536g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 731aa    MW: 79727.4 Da    PI: 6.1872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_115536g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-164488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
   MA_115536g0010 44 RERWSEEEHLKFLEALKMYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 88
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-153892IPR009057Homeodomain-like
PROSITE profilePS5129420.9073993IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-94190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-154291IPR006447Myb domain, plants
SMARTSM007171.0E-124391IPR001005SANT/Myb domain
PfamPF002492.7E-134487IPR001005SANT/Myb domain
CDDcd001671.98E-94689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MKMSLPSNIL TLSGDSNSNS NSICSSGDEL AAKVRKPYTI TKQRERWSEE EHLKFLEALK  60
MYGRAWRRIE EHIGTKTAVQ IRSHAQKFFS KLVRGSSSKG VSSTERTQDI DIPPPRPKRK  120
PRHPYPRKAV GTAHQSGSPA SKEGDILPSV VSSVPLLSLG DGPCKRARFD RHNAKTRLCN  180
SNNGQEVKME SPRLNSSPLS LKLFGQTMLV STIEGPNTFS TEPAVSNNQG DFHEFVPVQQ  240
ETSPLKIKAK NQILDDGNEI LHSYSLKSHT TAAVNSVLHS GSVSTADKDC REKTDSDEQI  300
SSELDTNSSC LTRNQESPSI FSGYPRHVSV QCVVDGAVSE NVNEVVNMTP LSHSALAMSM  360
SNNTSSLSKD EIMSPWPSTF SPVFPWAQMQ NGDTAVAEAV AVATVAAASA WWSLYGAVPS  420
LLHPRMFSGA TAAENISSVC KAETVGGVRE QSQSNTTERE GETLLQGSQS ENYTSSLIQE  480
SNDARRHAEK QSCQTEEEDQ IMKETELGKE RSQCASNTPS SNDPEIDPYS GTNIQENTRN  540
CVQSLQRNGG GYIPEAEEGS SIDEEEMCYS NNLSTKQGGL NEEKICVQNS RNNSYSRGQI  600
AFRALFAQEV LPQSFSPGDG MFSKIIGRDS FFEDSKQKSS RSIEGEMCPH VEGSGAGEEQ  660
AYTGKVHTQS SKAPFVSISR EKVLEDSEGV VSHGLLEASA VNFCKANKFI ASSFAKSKSG  720
VGFVPYERCS M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121RPKRKPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3115210.0KC311521.1 Picea abies CCA1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM4Q9T90.0M4Q9T9_PICAB; CCA1-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-32MYB_related family protein