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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
MA_1151g0010 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family |
C3H |
| Protein Properties |
Length: 274aa MW: 29045.9 Da PI: 8.8612 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MA_1151g0010 | genome | ConGenIE | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.5 | 1.7e-06 | 11 | 34 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k + C f+ t C++G++C+F+H
MA_1151g0010 11 KSKACTKFFSTSGCPFGENCHFMH 34
6678******************** PP
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| 2 | zf-CCCH | 26.2 | 1.3e-08 | 79 | 105 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt++C+++ C++Gd+C+FaH++
MA_1151g0010 79 YKTRICNRYGTAEGCRFGDKCHFAHSE 105
9************************95 PP
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| 3 | zf-CCCH | 37.8 | 3.1e-12 | 245 | 269 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C +f++ GtC +GdrC+FaHg
MA_1151g0010 245 YKTKVCENFSQ-GTCTFGDRCHFAHG 269
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.0E-8 | 5 | 34 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.21 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-6 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.465 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.4E-5 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.67E-9 | 76 | 109 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.2E-14 | 78 | 109 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.9E-4 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.286 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-5 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 5.84E-15 | 149 | 229 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 5.1E-10 | 158 | 228 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 7.1E-15 | 159 | 228 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.984 | 159 | 223 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 4.2E-11 | 161 | 224 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 7.83E-13 | 163 | 224 | No hit | No description |
| SuperFamily | SSF90229 | 5.76E-9 | 242 | 274 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.0E-16 | 243 | 274 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.4E-8 | 244 | 270 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.859 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-9 | 245 | 269 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MESLPTGLRS KSKACTKFFS TSGCPFGENC HFMHYIPGGM NLISQVSNLG SGLGTASRKS 60
TGPPTSILPS DQAAPVQPYK TRICNRYGTA EGCRFGDKCH FAHSENELKK GNTLAPVERE 120
RTLSKDAVPG VMDGRPGGRL VQREPTPPGM AAAASFGASA TAKISVDASL AGAIIGKGGV 180
NSKQICHTTG AKLAIRDHES DSNLKNIELE GSFDQIKLAS TMVHELIMQT SAVAAKPSGF 240
VFNNYKTKVC ENFSQGTCTF GDRCHFAHGA SELR
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