PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_114573g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 552aa MW: 60148.5 Da PI: 6.1964 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 438 | 476 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq MA_114573g0010 438 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 476 677888999*******998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.484 | 426 | 475 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.30E-6 | 436 | 480 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-11 | 436 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0053 | 437 | 481 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-8 | 440 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MAEETETSAT VSSGGNWWNA VSTGSSSSLV SEWSNINILQ PSPCASAALT DIQTLNWSSS 60 SNHHIRNSGN GEDVDNLSSS ITNNTSSSLT SMDSGHQELV DSGSLLGQFA HAVPDNNTLW 120 NQMLLGSSEG MQSSSVANLN EVLYSRALRQ ELVEPSDQLK KIQQEVPLQG WEFRNMASFQ 180 AEDIHLNPQQ QAPLLYNLDD RLQSSNAHAL PDLGRWSVAP PKQPGHSLPR NISLNAAYSN 240 TPQFDLSRIK QEYPGPYTSP DLGVSLSSNT QLLQGFGIHA EPNFKNEGFC HILESATTKA 300 FLKPTMAARG CHITGDDYPG RWLPNSSLSQ MLPSSPSKQS VLNFGSMSKQ VLDFSAGKPD 360 HLKAQQVSKT DCNLQYFPEG KQIHGPAQHR TMPHGEEARD SSSDTKRNNS CTDQSTAEAI 420 FKRPRLDTGS TLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLLEAIG YIKFLQDQVQ 480 VLSTPYLKSG GTSNPGSQDH KGWGSSDKKD SDEPKQDLRS RGLCLVPVSC TLHVANDNGA 540 DYWTPSLGGT YR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107531 | 0.0 | BT107531.1 Picea glauca clone GQ03108_M09 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 9e-44 | bHLH family protein |