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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
MA_1139g0010 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family |
C3H |
| Protein Properties |
Length: 241aa MW: 26868.5 Da PI: 8.6496 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MA_1139g0010 | genome | ConGenIE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 37 | 5.9e-12 | 58 | 82 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +++rtG C yG++C+F+H+p
MA_1139g0010 58 EPDCAYYMRTGLCGYGPNCRFNHPP 82
689********************97 PP
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| 2 | zf-CCCH | 30.5 | 6.2e-10 | 100 | 123 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+++++t C++G +Ck++H+
MA_1139g0010 100 QPECQYYLKTRACNFGVTCKYHHP 123
799********************8 PP
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| 3 | zf-CCCH | 31.6 | 2.9e-10 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C +++rtG Cky CkF+H++
MA_1139g0010 145 GEKECAYYMRTGSCKYAVHCKFHHPQ 170
6789********************97 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.695 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.7E-5 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-9 | 58 | 82 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.51E-6 | 58 | 82 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 61 | 81 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.155 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-7 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-6 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.793 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0015 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-7 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 149 | 169 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MEYHRQEENW AMHSNKNNVL TFTASTDMKS IEKAMGKMTL KSSVDPVESG SYPERVDEPD 60
CAYYMRTGLC GYGPNCRFNH PPNLKQAIAS KGEFPERVGQ PECQYYLKTR ACNFGVTCKY 120
HHPCDRNGLG GKIQMNYLGL PMRQGEKECA YYMRTGSCKY AVHCKFHHPQ PATIVSGYGS 180
SGSPTTPASS YPSGLLSWPL PRSPYVPGPR LQGSPTYVPI IFSPSQGVIP MSAWNNYQVS 240
P
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