PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_113047g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 404aa MW: 45541.5 Da PI: 7.6206

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_113047g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.7e-16	75	164	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ ++ L++a++ ++++ +rg+l+ ++Weev +++ r++g++ ++p qCk+k+e ++k+y+ ++ + +++ + s++p+f++++ MA_113047g0010 75 EWSDGAIHSLLDAYEAKWNHRNRGNLRVGDWEEVCSHVsnRSGGVKplKTPAQCKNKIEGMKKKYRSEALESCSNNGVNCSSWPFFSRMD 164 5***********************************99889996447***************99999988888899****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-16	75	164	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MVLLLNFFSR ELRFLGWNLS SLPSAKLLVV EFLKETSFAM DNVLPMDPAL HTQLTQIEKS 60 SKNSRDNEEI FKKGEWSDGA IHSLLDAYEA KWNHRNRGNL RVGDWEEVCS HVSNRSGGVK 120 PLKTPAQCKN KIEGMKKKYR SEALESCSNN GVNCSSWPFF SRMDLMLRCP TRNAGIPGGM 180 DAGYQGLSLM ENGEIFGFHE EYHTYLRHPN HQESEQEEDV SNHLLQTNEN FASILPESDT 240 SAPGCRLVAS PSHNHSPKPN PREKETRPNK AKLQKTGNKS CDFVVSSIKS FADSILKLQH 300 TKMEMYKDAE RLRSEAEEKR AELDLRRTEI IMNTQLQIAE LLSCKSHRRK PAASTPVHLT 360 TATINSISLD TVAPVNVIDI SGQTVQSVFP GNQYSVPHMS FLQP

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MVLLLNFFSR ELRFLGWNLS SLPSAKLLVV EFLKETSFAM DNVLPMDPAL HTQLTQIEKS  60
SKNSRDNEEI FKKGEWSDGA IHSLLDAYEA KWNHRNRGNL RVGDWEEVCS HVSNRSGGVK  120
PLKTPAQCKN KIEGMKKKYR SEALESCSNN GVNCSSWPFF SRMDLMLRCP TRNAGIPGGM  180
DAGYQGLSLM ENGEIFGFHE EYHTYLRHPN HQESEQEEDV SNHLLQTNEN FASILPESDT  240
SAPGCRLVAS PSHNHSPKPN PREKETRPNK AKLQKTGNKS CDFVVSSIKS FADSILKLQH  300
TKMEMYKDAE RLRSEAEEKR AELDLRRTEI IMNTQLQIAE LLSCKSHRRK PAASTPVHLT  360
TATINSISLD TVAPVNVIDI SGQTVQSVFP GNQYSVPHMS FLQP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-28	sequence-specific DNA binding transcription factors