PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11267g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 1002aa    MW: 108546 Da    PI: 5.8145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11267g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
    MA_11267g0020  70 RERWTEEEHHKFLEALKMHGRA-WRRIEEHIG-TKTAVQIRSHAQKF 114
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-1664120IPR009057Homeodomain-like
PROSITE profilePS5129421.35965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-867116IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-1468117IPR006447Myb domain, plants
SMARTSM007178.6E-1269117IPR001005SANT/Myb domain
PfamPF002491.3E-1370113IPR001005SANT/Myb domain
CDDcd001671.13E-872115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MASFPAVAVP QGERTETLAG QQVIQSNSVH YSEQSKSQSP SIRFPIDEVS SSGDEFTTKV  60
RKPYTITKQR ERWTEEEHHK FLEALKMHGR AWRRIEEHIG TKTAVQIRSH AQKFFSKLER  120
EASAGGVPMG KAQDISIPPP RPKRKPSHPY PRKAGTAIQI GPSTNEEENR SPSAVSSAPD  180
RLCIGSNLGG ETHKNAAFAP YNARPRPLQT NDSINLQETN MESSSTSISP SSLKLFGQTV  240
LVPTNESALD VNVKGAFREF TSQKKETHPL DGENPEGSKL ENVKGSLHSF GPKPKIKIVK  300
SENASGVAST ILPSESGTSM LEGSGESNAN LPCREIYTGQ QDSDEQLSEL DNNLNYISRE  360
HQASVPMPIY PRHVPVQRVE GGAHIPLQRA EGGVQEFAAI NTLNGNGSLS DATEKMKTDV  420
QTSQLNVLLP FPGMPGSFNP AYNNLERFGC IPGFIAPGTA PNGSLPPWHL TPSAALHHPA  480
YTAATLAAAA FWPGLVSGAS PVATGDPQPP REGNNGHSFG EETSAMAAVT AATVAAASAW  540
WTLHGAIPPP YLHPGIYGPV VAAMAAEAAA VAAAAAASGN SSPLCKTEPV REARKHEKMI  600
TTEEDGSDPN ITSCNEESCD VEMQIENQNC QVEEQDEIAL CINLPDGENT NSRKVIKERS  660
SSGSNTPSSA DPEIDPCLGT NTEVKGNSER DFEFNWVGSG SSDAGGEEAL AKKRTNCIFP  720
EAPGKTEREK NNLFTKQDGK MDYNENYVNK DRCQSYGGDA AGHRSKSGGH LNETWKEVSQ  780
EGRIAFQALF NRDVLPQSFI PCQNLRDQDK VPKVSRKYYC NDAKQKPSKT YRDEIQDDAQ  840
NMIVNQNQAC NGDALTEDCS CPHKITLKAA CSPVQVKKIH DSEATDNYRS LEKYGDSETS  900
LLLNKSVAVD FKPSNSSVIS SFGNFRPDSS SDLNFFQTSS VFHPHPVGGS AAALLAISFS  960
YMFQIGQLAD LQIVHIGSVT WETLCTFDHM GHEGPMMAQI EP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1232491e-123BT123249.1 Picea sitchensis clone WS04710_N07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S8A20.0A0A0C9S8A2_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11910_4056 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.17e-38circadian clock associated 1