PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_109104g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 489aa    MW: 53974.6 Da    PI: 8.1608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_109104g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29281339259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers++dp+ ++itY+ eHnh 
  MA_109104g0010 281 SDLWAWRKYGQKPIKGSPYPRGYYRCSSCkGCPARKQVERSHTDPTKLVITYTAEHNHA 339
                     699***********************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.135275341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-29279341IPR003657WRKY domain
SuperFamilySSF1182909.15E-25279341IPR003657WRKY domain
SMARTSM007744.0E-33280340IPR003657WRKY domain
PfamPF031062.3E-24282338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDRVYPVVNV SRIVFRVKNL GLIRGKLSSS YGSRRRSRSG CQGQQTGLQG AVVRASRQDC  60
SHARIDELNF DSCNLLDGGG VVEIPISNSN SNSISISNIV TYPPFYDCNP SRSQSLPPSM  120
FESLDHYYHH VAQKVSWSYG TVGSSLSAEG KAEGKDQTHD LIMPTTSTTS SNQEEQASGR  180
IRFDVVRPRH ILSSSPPRAV HVKSPARSPT RQDDPSAKTP DSEADCSPSS PIRTESTAEK  240
IDSNKTTASR TNRRRNQQRR TVCIPATEGS WNKPGGGGVP SDLWAWRKYG QKPIKGSPYP  300
RGYYRCSSCK GCPARKQVER SHTDPTKLVI TYTAEHNHAW PTSNPRNGLA LTGSSTSTHK  360
DMMPLVVPHS PQKSDVPAAK GSNPASPTTD KIEQEKPRSE PATDSLDFNL IEETMDYMEE  420
DHDQTAGLHV LKSNHMHYDD LFADLGELKD FARYFADYKS DEETGSTIVD PYNLFNWSSS  480
SSNKTPADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19259342680Disease resistance protein RRS1
5w3x_D3e-19259342680Disease resistance protein RRS1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1140050.0BT114005.1 Picea glauca clone GQ03506_F12 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-40WRKY DNA-binding protein 35