PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_108727g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 898aa    MW: 100680 Da    PI: 6.3317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_108727g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071552137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtl 37
                     + +W t+E++ l  avk++G ++W++++ +++  ++++
   MA_108727g0010 15 KSKWGTWEELVLGSAVKKHGADNWDRVSLELQaRKLSP 52
                     679**************************999755555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-4965IPR009057Homeodomain-like
PROSITE profilePS500906.5621068IPR017877Myb-like domain
SMARTSM007174.8E-41470IPR001005SANT/Myb domain
PfamPF002491.4E-51549IPR001005SANT/Myb domain
CDDcd001672.12E-41767No hitNo description
SuperFamilySSF473705.63E-18429551IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.1E-15433566IPR001487Bromodomain
SMARTSM002972.3E-14438549IPR001487Bromodomain
CDDcd043695.30E-15448544No hitNo description
PfamPF004394.3E-10456533IPR001487Bromodomain
PROSITE profilePS5001411.215460530IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
METENNNNNN NNTNKSKWGT WEELVLGSAV KKHGADNWDR VSLELQARKL SPYVFSSEDC  60
KAKYHALQGR FKSIHGNSCS NSLPWLEELR KLRVAQLKRE LERYDGSIVS LESKLNKLKT  120
EREQSLLKEQ QKTIEKHTSQ QEPEKSPEEK EGKDGFHMCP ETDPSDRKRE DGKIEPLDNP  180
NRPLENPDPG SGNPNEDLGS KEALAVHDEI PLPLESAPLP SAEGPVPQQP DSKTLDKEPA  240
KPETISGPAS PLDSYYGSSE TIAKEHPIRM GSEQEEDDVD DRMGSEQDDD RMGSEQDDDD  300
DDDDDDDDDN DVREQVCVES TDVHSETVVG MKGSGFQECS AESREIGEEG KGICEKRCDR  360
GERLQPWDSN DVLSSAELSS RRRDGRNTSS NSHDASETVR EHYKDYEDSM GPWQHQATRS  420
SGDSQVEGTD EMSPMSKRSR REAKVPGKLI PLLECLRAIS AHKFGSLFKH RLESQDNLYY  480
QSMIRRHVDL AMVRSRLEEG SYSGSVEFFR DLLLVFNNAL VYYSKYSQEF VAAYVLRELA  540
TKEMANIFQT EALLKQEGPS TRKREPRKLP EFSPSAKPNS TSMVPSRKRN ASTSHGEYQV  600
GCPKGAQPTL EQAVPSVIQV QQPQQAENRK ENETKDDKIK GNKIDEQKVV EISASPSMTQ  660
ILEKQREHKI DAAKARTAAN SSAGNAREQS IIEKIAVESK ERIRDTQYLK EPIVTSLKNN  720
HQTKKTTINN KIELKKGSSS KSDLEKNSSD LLAPMKSSGS IFRAKKSSAS TVEPTKGSGH  780
IIETNKSSGN IAKPIKSSNT VEQEMNSSNA IRRNRELKKK EQQDNFPLTP PLKQPLASTS  840
TTEAQPLIKR GVGRPPKHAK QASQQQKTQL LGQKQQAPEL KATESELLLP RPRKRSRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1116080.0BT111608.1 Picea glauca clone GQ03301_E02 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-25DNA-binding bromodomain-containing protein