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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10713g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 582aa MW: 65522 Da PI: 4.2047 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.1e-08 | 267 | 315 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WTteE++ + ++v++ + W+ + ++ R+ k+++s+++++ MA_10713g0010 267 EKWTTEEEQTFQELVHMNPISsnknFWNYLSVAFP-SRSKKELVSYYFNV 315 58****************999999***********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.18E-5 | 265 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0085 | 265 | 318 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.237 | 268 | 316 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.49E-4 | 268 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MPTEEVAEAV LTNGAIGGSN LCEYGFQMPQ EKISVVHQAK DMETCRSVSN VGNSRSRVPE 60 DLDFDLVSAS SPSFKNMLSD NETMDQACKG CVNIEKYSSS PSVSESGGFC SRTYAEVDCS 120 EGEHFVHYES SAGLGCFYLE HVPHKKVPIG PEFQADIPVC RPEARVFLSD AYDRMSSQPC 180 QAVNTNDDDK YSQSLIGNRV WPLVGSNGVT TKDTVGQGRS TYCSCPDSNS IRCVKEHIEA 240 EREMLKLKLG EAFYSWGFHD MGENVSEKWT TEEEQTFQEL VHMNPISSNK NFWNYLSVAF 300 PSRSKKELVS YYFNVFVLRR RAFQNRLDPD NIDSDDDEAD CTNSEIGISE RLLMTEEDDD 360 SVDESDATEG DELVVESDDE TVDTMEDGDE MAASSMLEGQ TMYRSNHDFD FGNLEKKFLE 420 SQDEDTDDVT WDYVGHSNIH SNLIEGQYLQ DDSCMSYEWN HEKKSSGSTW IRTAGFPVVE 480 DEKVKATTSF NHCCKGQQMD INNVSDMLCE DIKQKGFLSR KEEFVIDGHC SLLDPSDSKL 540 WDIALVTSLK ADTDRLVSTC SMIKEIFGDE ARDNEKCRNR TI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT108860 | 0.0 | BT108860.1 Picea glauca clone GQ03201_O12 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2947 | 4 | 5 |