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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_104862g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 465aa MW: 52606.2 Da PI: 6.6075 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 304 | 344 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E l+++a ++G++ + +I++++ Rt+ qc+ ++ k MA_104862g0010 304 WTDNERCLFINALSEYGKD-FQSISSHVH-SRTEDQCRTFFCK 344 *****************99.*********.********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-13 | 63 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.165 | 75 | 126 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-5 | 76 | 124 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 14.884 | 299 | 350 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 300 | 348 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.96E-11 | 300 | 350 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-7 | 301 | 344 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-7 | 303 | 344 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-6 | 304 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MNVAYFNPAG ALTLAPTSQQ GLLRRRLALD VHLNIHRAFL KMPTMTLDDK GRRFSRILTN 60 NGLVEDPVAV EKERKMINPW TSEEKELFWA KFAIFRKNFG KVASFLEHKT VADCVEFYYK 120 NHKSEYPKKS KKRHCLEKKQ ECNISARPYL STLGNRRHYI SYATSLDVLG AAVALTMDTS 180 QKNRIQGASQ ICNGTQMPLV SEKIRGEVCG KHDNGRTADT DFLGSETEFT AAADVLAGTY 240 GVTSEATGSC IRSTADIPES FYKKPHSMKF MKKTDGMDPP QTYEVDFETC NSTAECHEDN 300 NTDWTDNERC LFINALSEYG KDFQSISSHV HSRTEDQCRT FFCKSRKVLK LDELVSQEQV 360 IEVQRNSAAD LNRGHSEMHV DDMSLSNVPT SDKTAETYKS QVMDAARQNA RTEIGLDEAA 420 QVCHPHNIIE REDCKVAQDE EIELEELWKI CKRNLAVAPM EASAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 3e-17 | 37 | 125 | 4 | 91 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 3e-17 | 37 | 125 | 4 | 91 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT105379 | 0.0 | BT105379.1 Picea glauca clone GQ02821_K16 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-51 | MYB family protein |