PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_10436944g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 354aa MW: 36903.3 Da PI: 10.6131

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436944g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	133	177	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r+ WT+eEd l+ av++ G g+W++I + Rt+ q+ rw MA_10436944g0010 133 RKLWTQEEDNELIAAVQKCGEGNWSSILKGAFkHDRTASQLSQRW 177 567************************99999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.79	127	185	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-15	128	184	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.52E-13	130	183	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-10	132	183	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-9	133	177	IPR001005	SANT/Myb domain
CDD	cd11660	1.92E-14	136	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDWIRGKVGV VIWLFIAPVS KRHFEIKPFP TVGSEASSEA AACVKVLATS GTPNNAGLPS 60 HSTLEAPLTI NIPSNTKISD VEVNNQQSTI STQGMNITVP VSIQKQQLPT VCSLEGTDGN 120 VSTNSIHPAR KKRKLWTQEE DNELIAAVQK CGEGNWSSIL KGAFKHDRTA SQLSQRWSLI 180 RKRKVVSNQG NLGNSSTLSA TLDATQSTAQ AVPVAISTIS GVAVTTTAVT ANSAGATAVM 240 TSCSSLVQST ALIGMGISFS QSTAGKISDN SASQLHQAQH VHEQGIVRGS TGSSNVSTTL 300 PSTKSRHTTK KHATKTAAPL PATNPGPARC GNAPASRPGT SEALSRGSTK TLSX

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDWIRGKVGV VIWLFIAPVS KRHFEIKPFP TVGSEASSEA AACVKVLATS GTPNNAGLPS  60
HSTLEAPLTI NIPSNTKISD VEVNNQQSTI STQGMNITVP VSIQKQQLPT VCSLEGTDGN  120
VSTNSIHPAR KKRKLWTQEE DNELIAAVQK CGEGNWSSIL KGAFKHDRTA SQLSQRWSLI  180
RKRKVVSNQG NLGNSSTLSA TLDATQSTAQ AVPVAISTIS GVAVTTTAVT ANSAGATAVM  240
TSCSSLVQST ALIGMGISFS QSTAGKISDN SASQLHQAQH VHEQGIVRGS TGSSNVSTTL  300
PSTKSRHTTK KHATKTAAPL PATNPGPARC GNAPASRPGT SEALSRGSTK TLSX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5923	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-39	MYB_related family protein