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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436747g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 343aa MW: 38435.8 Da PI: 6.4387 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.7e-08 | 8 | 30 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W+ I+ +++ gRt++++k++w++ MA_10436747g0020 8 R-WSQISVHLP-GRTDNEIKNYWNS 30 5.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.164 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-7 | 6 | 39 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.84E-6 | 7 | 29 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-11 | 7 | 32 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-5 | 7 | 30 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSMTMLNRWS QISVHLPGRT DNEIKNYWNS CIKKKRKFKH HISSQCAQPY IDAKPEGYQT 60 PNDTFNVVPT GDNQFCVPGV SELKQEQVQD NNNEINPLIS YFQTSTHTFD SVSSHAAFLG 120 STGITIPAFA ESECLKEKVE NDEWTTRHSY SNADNWSHVV NPGAYRGHTT RISVVEDCES 180 LYENTTHQSC SSPSFHSQFV APAIKWPPGK SNGFQVEDDC RDRLNLGYDV STGVPKYTEI 240 YSRQKSYRLP QIHGGDCLTV PYQETNANPI STISGGSGSG QFEIECNSEA GHVTLSTNDD 300 MYNLNTRAML HFRRMTICTI SILVVVLISI ESIVISIKST LAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 1e-11 | myb domain protein 55 |