PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10436688g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 477aa MW: 52875.5 Da PI: 9.8782

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10436688g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.7e-06	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H MA_10436688g0010 156 YVCEICNQGFQRDQNLQMHRRRH 178 9*********************9 PP
2	zf-C2H2	15.9	3.8e-05	303	325	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s++k H++t+ MA_10436688g0010 303 WKCEKCSKGYAVQSDYKAHLKTC 325 58*******************98 PP
3	zf-C2H2	10.8	0.0015	333	351	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ MA_10436688g0010 333 DCGRVFSRVESFIEHQDTC 351 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.5E-5	153	179	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	155	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	156	178	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	156	178	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	178	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.9E-4	294	324	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	48	303	330	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MRVQTPNPWP LRPNYDISHK ACRLSTGPLL VTSAYTVGRR GAVPGWSSLS ARPLFNQSRI 60 LKVAVSSSSS GSNMSSLPSP GTAASGTSGS IHGTSLHIQA VPGFNSSSVR TSSPFLASST 120 TTNSNNKRKR RPAGTPDPDA EVVALSPKTL MESDRYVCEI CNQGFQRDQN LQMHRRRHKV 180 PWKLLKRPTP EVRKRVVESF IEHQDTCITA KERAAFGYCI DPPSLPSLTA GTRSSNDTLS 240 ATRSGHSSVD SWELLKRPTP EVRKRVYVYP DTTCLHNDPC HALGDLVGIK KHFHRKHNIE 300 KQWKCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CITAKERAAF 360 GYCIDPPSLP SLTAGTRSSN DTLSATRSGH SSVGIQFDFG KLHEQEANWL NKELRELQFL 420 LAKHQSDTFE TAIRQSNNAV GTVTRDHIRS LAYDPRSNLS TSPPKEHRFL HDTSEVL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MRVQTPNPWP LRPNYDISHK ACRLSTGPLL VTSAYTVGRR GAVPGWSSLS ARPLFNQSRI  60
LKVAVSSSSS GSNMSSLPSP GTAASGTSGS IHGTSLHIQA VPGFNSSSVR TSSPFLASST  120
TTNSNNKRKR RPAGTPDPDA EVVALSPKTL MESDRYVCEI CNQGFQRDQN LQMHRRRHKV  180
PWKLLKRPTP EVRKRVVESF IEHQDTCITA KERAAFGYCI DPPSLPSLTA GTRSSNDTLS  240
ATRSGHSSVD SWELLKRPTP EVRKRVYVYP DTTCLHNDPC HALGDLVGIK KHFHRKHNIE  300
KQWKCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDT CITAKERAAF  360
GYCIDPPSLP SLTAGTRSSN DTLSATRSGH SSVGIQFDFG KLHEQEANWL NKELRELQFL  420
LAKHQSDTFE TAIRQSNNAV GTVTRDHIRS LAYDPRSNLS TSPPKEHRFL HDTSEVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-19	300	359	4	63	Zinc finger protein JACKDAW
5b3h_F	1e-19	300	359	4	63	Zinc finger protein JACKDAW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0M1W1	1e-85	A0A0E0M1W1_ORYPU; Uncharacterized protein
STRING	OPUNC09G10740.1	2e-86	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.2	2e-57	indeterminate(ID)-domain 14