PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436315g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 18567.4 Da PI: 5.6311 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.9e-18 | 100 | 165 | 1 | 62 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvlt 62 f+k+ tpsdv+k++rlv+pk++ae++ +++e++ l +ed +g++W+++++y+++s++yvlt MA_10436315g0020 100 FDKAVTPSDVGKLNRLVIPKQCAEKYfpldVSSSEKGLLLNFEDNTGKVWRFRYSYWNSSQSYVLT 165 89****************************55567889***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-26 | 93 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-17 | 96 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.38E-16 | 98 | 165 | No hit | No description |
Pfam | PF02362 | 6.8E-15 | 100 | 165 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTNFSPMGDD DPEVRFMNEH TKREIVDMLR KHTYDEELEH HSKRIKMIAA RSAAMNNAEA 60 SGLGADVCQE SEGVVDGNAN AASSSTATAD RGGLPREHLF DKAVTPSDVG KLNRLVIPKQ 120 CAEKYFPLDV SSSEKGLLLN FEDNTGKVWR FRYSYWNSSQ SYVLTX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-39 | 96 | 165 | 4 | 73 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-39 | 96 | 165 | 4 | 73 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895704.1 | 1e-50 | AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X1 | ||||
Refseq | XP_015895705.1 | 1e-50 | AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X2 | ||||
Swissprot | Q9ZWM9 | 4e-45 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | D8S6Z7 | 1e-51 | D8S6Z7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20021 | 2e-52 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 2e-45 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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