PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10436047g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 269aa    MW: 29682.1 Da    PI: 7.0763
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10436047g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.6e-18140173134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C  t+TplWR+gp+g+k+LCnaCG++y kk+
  MA_10436047g0010 140 CADCERTTTPLWRSGPQGPKSLCNACGIRYNKKK 173
                       ******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.756134169IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-18134185IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-13135175No hitNo description
Gene3DG3DSA:3.30.50.107.7E-16138174IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.29E-12139176No hitNo description
PfamPF003201.5E-15140174IPR000679Zinc finger, GATA-type
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIATDWEFNG LVRSPSGYGS SRSLSSPETN NAKTMDIEFM RFKEDEEAAE SDDINVHGHA  60
KPDLALSRSD SNLCEEEGST FKVDHGFRRI LMTSFTTDSD INDDQVGETA GITEHENAPA  120
ARAIKGKGTA GSLRNSPRVC ADCERTTTPL WRSGPQGPKS LCNACGIRYN KKKRAMIAAA  180
AAAESLSYKK RSTNSWNTKS TRSSLETTSD RQVQFSDFYK CRGLGKDMDN HMQKELSRLP  240
ILIKVERSFG ELEEAAASLM AIKFGHCYA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-18GATA transcription factor 16